Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2930 ATGATACCCACAACAACAACTCACGACGTTCCCTGGATGGAACCACAACACACAACATGGACCTACAACAACAGCATTGGTGACCCCATAAACGACGACGTTTCAACGATGGGTGGTGATGGCCATTTTCCTCCCTTCAAATCCACGCTGGAAGGTGACTGGTACATGAATCCACCGCACCATGAGGAGCTTCTGCAAAACCAGACGCAACACACCACCGACATTACTTTCCCAAACACTGGTTTTCTCATGGATTCATCTTCCTTCACCCTCGACCCTTCATCACACCACTCACAATCCTTTTTGCCTCCGAAATCAGACTTCTCCTCTTTCTTCAGCACCACCATAAGTAGCAACAACAACAACAGTGACAACCCTTTTGGCAATGCCTTCAATTTGGGCTCGCATGGCGGTTCCATCGCTTCCAATTCCCCTATTTTCTTCTCGCCCCAAATGGGCAGCACGGTCCCCGAGTTGAGTTCGAACCCCGATTTCACTGCAACCCGTGTCGTCGAACTCAGTGGCGGGTTTGTCCCAATAAGTGTAGAACAAGAACAAGCCTTTGACGGTTCTGGGCCTCATAATGCTTTGTTTTCGAACAAGGCTAATGTTTTGAGGCCTCTCGAGGCTCTTCCTCCGGTGGGTGCGTCACCGACCTTGCTCCAGAAGCGGGCAGCGCGCTCAGGCGTTGGCGGTGGAGTCTTGGTGGTTTCTACGCCACCGAGGTTTGCCGGCTTTTCAGCTGGGTTGAACTCAGAAGAGGGAGATGTTGAGGAAGAGTTGAATTATGAATTTGATGAAATTTTTGATATTGGAAAGTTGGAGGAGAATGAGAATGATGGGGGCAACAATTTTTATTCAAATAACAATATTGATGCTAATAATCATAATAGTGATAACGGTATCACTGGTGGAGACCATAAAGGCAGGAAGAAGGGGATTCCGGCGAAGAATCTCATGGCTGAGAGGCGGCGCAGGAAGAAACTCAATGATAGGTTGTACATGCTTCGGTCTGTTGTGCCAAGGATTAGCAAGATGGATAGAGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTACTTCAACAGATTAGTGACCTTCATAATGAGCTAGAGTCAAGCTCTCCTGGCTCATATTTGCCACCTGCAAGCTTTCACCCTTTGACACCCACTCTGCAAACCCTTCCCTCTCGAGTGAAGGAAGAACCAGTGCCAAGTCCGAAAAACCACTCAGCAAAGGTGGAGGTAAGGGTAAGGGAAGGAAGGGATGTGAATATCCATATGTTTTGTGCCCGCAGACCAGGTCTTTTGCTTTCCACCATGAGGGCATTGGATAACCTTGGATTGGATGTTCAACAAGTTGTTATCAGTTGTTTCAATGGTTTTGCTTTAGATGTGTTCAGAGCTGAGCAATGCAGAGAAGGCCAAGATGTCCTCCCTGAGCAAATTAAAACAGTATTGTTGAATATAGCAGGTTTCAATGGTATGATGTGA 1500 0.472 MIPTTTTHDVPWMEPQHTTWTYNNSIGDPINDDVSTMGGDGHFPPFKSTLEGDWYMNPPHHEELLQNQTQHTTDITFPNTGFLMDSSSFTLDPSSHHSQSFLPPKSDFSSFFSTTISSNNNNSDNPFGNAFNLGSHGGSIASNSPIFFSPQMGSTVPELSSNPDFTATRVVELSGGFVPISVEQEQAFDGSGPHNALFSNKANVLRPLEALPPVGASPTLLQKRAARSGVGGGVLVVSTPPRFAGFSAGLNSEEGDVEEELNYEFDEIFDIGKLEENENDGGNNFYSNNNIDANNHNSDNGITGGDHKGRKKGIPAKNLMAERRRRKKLNDRLYMLRSVVPRISKMDRASILGDAIDYLKELLQQISDLHNELESSSPGSYLPPASFHPLTPTLQTLPSRVKEEPVPSPKNHSAKVEVRVREGRDVNIHMFCARRPGLLLSTMRALDNLGLDVQQVVISCFNGFALDVFRAEQCREGQDVLPEQIKTVLLNIAGFNGMM* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2930 499 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 88 499 - -
Lja2g2930 499 SMART finulus 319 368 IPR011598 GO:0046983
Lja2g2930 499 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 386 IPR036638 GO:0046983
Lja2g2930 499 MobiDBLite consensus disorder prediction 280 314 - -
Lja2g2930 499 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Lja2g2930 499 MobiDBLite consensus disorder prediction 373 393 - -
Lja2g2930 499 Gene3D - 308 377 IPR036638 GO:0046983
Lja2g2930 499 MobiDBLite consensus disorder prediction 280 302 - -
Lja2g2930 499 CDD ACT_UUR-ACR-like 428 469 - -
Lja2g2930 499 PANTHER BHLH TRANSCRIPTIONAL FACTOR 88 499 - -
Lja2g2930 499 Pfam Helix-loop-helix DNA-binding domain 320 362 IPR011598 GO:0046983
Lja2g2930 499 CDD bHLH_AtAMS_like 316 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2930 Lja-Chr2 49878963 49882071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2930 46 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.684 5.94e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g2930 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2930 - - jre:109001857 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1691 1 18640622 18644035 Lja2g2930 2 49878963 49882071 PCT