Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2922 ATGGTAAGGTCCAGAAGCAGCAGCAGTAACAATGAGAGGAAACAAAGTTGCTACAGAGATCACTGGAGACCCCTTGAAGATGAGAAACTAAGGCAACTTGTGAATCAACATGGTGCACAGAACTGGAATTTTATTTCTGAACATCTTGAAGGAAGATCAGGGAAAAGCTGCAGATTGAGGTGGTACAATCAACTAAACCCAAACATAATTAAATTTCCCTTCACTGATGAGGAGGAAGAAAAGCTGCTATCACTTAACAAGGTTAAGGGAAACCAATGGGCTTCCATAGCCAGATACTTCCCTGGAAGAACTGACAATGCAGTCAAGAATTATTTCCATGGACTAATGGCCAGAAGAAGGAAGAAAGAGAGAAGGACACTGTTTGGTGACAAATTTGGCCACATTTCAAGAATCAATTTCAACTCACAGAACTTCAAAAACACTGAAATTTTTTATGTGCCTTATAACTCACAGGCACCAACAACTCCTTTGACTCTAACAAGTAGTTCTTCAACCATCACATCAAGCAAGGCTCACAAAGACTCAAGTGTTTCTTCATGTGTTGGAGAGAAAGTTAAACCATTTGATTTGGAAAAAATTTCAAATGCTAGTCCTGCATTTGTAGGTTCTTGGATTCTTGGCACATACAAAAGCTTCACTGCACCAAGCCTTCCTAGTATTGGTAAGGTTGATCCTCTTCCAAAATTCTCATACACTAATTATGGCAACCGAACTGAGGACTCCATCACATGCTGCAACTCTTGTAAGCATCATGAGCAAGAACAAACTGAACCTCTTAATCTTAATCTCAAGCAAAAGGGTGTTGTTTCCTTCATAGACTTTCTTGGAGTGGGAAGCTCTTCATCCCATGATGACAGCATTAGGGGACCATGA 894 0.4027 MVRSRSSSSNNERKQSCYRDHWRPLEDEKLRQLVNQHGAQNWNFISEHLEGRSGKSCRLRWYNQLNPNIIKFPFTDEEEEKLLSLNKVKGNQWASIARYFPGRTDNAVKNYFHGLMARRRKKERRTLFGDKFGHISRINFNSQNFKNTEIFYVPYNSQAPTTPLTLTSSSSTITSSKAHKDSSVSSCVGEKVKPFDLEKISNASPAFVGSWILGTYKSFTAPSLPSIGKVDPLPKFSYTNYGNRTEDSITCCNSCKHHEQEQTEPLNLNLKQKGVVSFIDFLGVGSSSSHDDSIRGP* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2922 297 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Lja2g2922 297 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Lja2g2922 297 Pfam Myb-like DNA-binding domain 73 113 IPR001005 -
Lja2g2922 297 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
Lja2g2922 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Lja2g2922 297 Gene3D - 19 70 - -
Lja2g2922 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 120 IPR017930 -
Lja2g2922 297 PANTHER MYB TRANSCRIPTION FACTOR 6 286 - -
Lja2g2922 297 SUPERFAMILY Homeodomain-like 17 112 IPR009057 -
Lja2g2922 297 CDD SANT 22 63 IPR001005 -
Lja2g2922 297 PANTHER MYB PROTEIN-RELATED 6 286 - -
Lja2g2922 297 CDD SANT 73 113 IPR001005 -
Lja2g2922 297 Gene3D - 72 131 - -
Lja2g2922 297 SMART sant 18 67 IPR001005 -
Lja2g2922 297 SMART sant 70 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2922 Lja-Chr2 49741285 49742274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2922 1 122 MYB Transcription Factor Family AT4G33450 67.213 7.19e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g2922 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2922 K09422 - pop:7466738 204.142