Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2918 ATGGCTTCTAACACGCTTATGAGTTCTGCTATCTCAGCATTCCCTTCTCTTCTTTCTTCTTCAAAATCAAGATTCGCCACTGCAGCTCCACTATCATGTTTTGGTACCAATGCCTCTTCTCGTTTCTCCATGACTGCTGACTGGATGCCTGGCCAGCCTAGACCCCCTTACCTTGATGGCTCAGCACCTGGTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGATTCAAGGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCAGAGGCACTAGGCTTAGGCAACTGGGTAAAAGCTCAGGAATGGGCAGCACTTCCTGGGGGACAAGCAACCTACCTAGGCAACCCTGTTCCATGGGGTACCCTCCCCACCGTTCTGGCCATTGAATTCCTTGCTATTTCTTTTGTGGAGCACCAGAGAAGCATGGAGAAGGACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCCAAGGACCCTAAAAAGTTCCATGAATACAAAGTCAAAGAAATTAAGAATGGACGTCTTGCTCTGTTGGCTTTTGTGGGTTTCTGTGTTCAGCAATCAGCTTATCCAGGCACTGGACCCTTGGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGGAATGTCCTTATTCCCCCACAATAG 726 0.4848 MASNTLMSSAISAFPSLLSSSKSRFATAAPLSCFGTNASSRFSMTADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVLIPPQ* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2918 241 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 20 234 IPR001344 GO:0009765|GO:0016020
Lja2g2918 241 SUPERFAMILY Chlorophyll a-b binding protein 38 237 - -
Lja2g2918 241 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC 20 234 - -
Lja2g2918 241 Gene3D Chlorophyll a/b binding protein domain 49 235 - -
Lja2g2918 241 Pfam Chlorophyll A-B binding protein 55 209 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2918 Lja-Chr2 49548198 49550443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2918 1 196 Chloroplast and Mitochondria Gene Families AT3G54890 82.323 3.32e-108 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2918 K08907 - gmx:100305992 455.292