Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2917 ATGACCAGAAAGAAGGTGAAACTCGCATTCATAACCAATGATTCAGCGAGGAAGGCGACATTCAAGAAAAGGAAGAAGGGACTAATGAAGAAGGTTAGTGAACTCAGCAAACTTTGCGATATTGATGCTTGTGCTATAGTTTATAGTCCCTATGATCCTCAGCCAGAGGTTTGGGCAATGCCTGAATTGGAGCAGAGCAAGAAGATGGTGAATCAAGAGAGCTTTCTGAGACAGAGAATCCAAAAGGCCACAGAGCAGGTGAAGAAACAGAGGAGGGATAACAGAGAAAAGGAGATAACACAACTCATGTTTCAGTGCCTCAGTGACAGTGCAGGTAAAATTTTGGACAATATAAGCATGGTTGATTTAAATGATCTGGCTTGGATTATTGACCAGAACTTGAAGGACATCAATCAAAGGATTCAAGTGTTGACCAAGAAGAATGGTCAGAGCCAAGCCCAAATCCAAATGGTAGCACCAGCACCAGCACCAGCACCAGTGGTGACTGATGTTGTAGCCAAGATTGAAGAGATGAACATTGATGATGTAATGCAGAAGCAGCATTGGTTTATGAATTTGATGAATAGTAGTGGTGGGGATCAGGCACTGCCTTTGGGAGATGTCAATCACCAAAGTGGTTTTTGGCCATTTTTCCACTAA 660 0.4273 MTRKKVKLAFITNDSARKATFKKRKKGLMKKVSELSKLCDIDACAIVYSPYDPQPEVWAMPELEQSKKMVNQESFLRQRIQKATEQVKKQRRDNREKEITQLMFQCLSDSAGKILDNISMVDLNDLAWIIDQNLKDINQRIQVLTKKNGQSQAQIQMVAPAPAPAPVVTDVVAKIEEMNIDDVMQKQHWFMNLMNSSGGDQALPLGDVNHQSGFWPFFH* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2917 219 CDD MADS_SRF_like 2 71 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja2g2917 219 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Lja2g2917 219 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lja2g2917 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 - -
Lja2g2917 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lja2g2917 219 Coils Coil 134 154 - -
Lja2g2917 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 195 - -
Lja2g2917 219 Gene3D - 13 107 IPR036879 GO:0003677|GO:0046983
Lja2g2917 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja2g2917 219 Coils Coil 73 100 - -
Lja2g2917 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja2g2917 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja2g2917 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2917 Lja-Chr2 49475864 49476568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2917 1 169 Type I MADS-box Gene Family AT5G48670 53.684 8.32e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja2g2917 SRF-TF 9.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2917 - - gmx:100813231 303.523