Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2904 ATGGGGAAGAAAGGGAGTTGGTTTTCTGCAGTCAAGAAAGCTTTCAGTCCAGGTTCCAGAAAAGATAAGAAAAGCCACAAGTCAAAGAAAGAATGTATCCAAAAGGATTCAGAACTAGCATCTGAAGAAGCACCGGTGGTTGTTGCTCCCACTCTTCCATCAATACAAGATGCTAAATTAACCGAGGCGGAGAATGAACAAAACAAACATGCTCTTTCTTTGGCTTTTGCCTCTGCTGTGGCTGCAGGGGCGGCTGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTCCGTCTCACGAGTATGCCTCATAACCATGGATTGACCAAGGAAGAAATAGCTGCTATCAAGATTCAGACGGTGTTCCGTGGATATTTGGCAAGAAGGGCATTGCACGCTTTGAGAGGTTTGGTGAGGTTGAAAACAATTATACAAGGGCAATCAGTTAAACGGCAAGCTAATAGCACCTTACGATGCATGCAAACTCTAGCAAGATTGCAGTCTCAGGTTCGTGAAAGGAGAATCAGAATGTCTGAGGAGAACCAGGCTCTTCAGCGGCAACTACAGCAGAAACATGAAAAAGAACTTGAGAAATTGCAAGCTTCTCAGGTTGGAGAAGAATGGGATGATAGCTTGCAGACAAAGGAGCAAATTGAGGCAAAAGTGTTGCAAAGGCAAGAAGCTGCTTTGAAAAGAGAGAGGGCTTTGGCCTATTCATTCTCACATCAGCAAACATGGAAGAACTCATCAAAATCAGTAAATCCCACATTTATGGACCCAAACAATCCCCACTGGGGCTGGAGTTGGCTAGAGAGATGGATGGCTGGAAGCATTATGGATCACAATGATCATGCATCAGTAAAAAGTTCAGCAAGCCAAGCAATTTCTACTGGAAAAATCACCAAATTGTATTCCCCTTCTGCCCAAAAAGCAAAAAAACCTGCTGCCACTTACAATTCCCCGTCAACCCCGGCCTCAAAGGCCCCATCTTCATCATCTGTTAATGGAAAGGCAAGGCCATCAAGCTCAAAAGGCAGTGCTTGGGGTTTGGATGTTGATGACTCAAGAAGTTTGCTCAGTGTTCAGTCGGAACGTTATCGCCGATACAGCATTGCGGGATCCTCGGTGAGAGATGATGAGAGCCTTGCAAGCTCACCAGCTTTTCCAAGTTACATGGCACTCACAAGCTCAGCAAAAGCCAGGTCCAAGATGCAAAGGAGTGATAAAGGAGCTTCTGCTCTTTCTGCAAGAAAGAGGCTTTCTTTCCCTGCTTCTCCATCTATTTCAAGAAGGCATTCTGGTCCTCCTAAGGTGGAAATGTTTTCCAAGAAGGATGTTGCCACTATCAGTTGA 1350 0.4548 MGKKGSWFSAVKKAFSPGSRKDKKSHKSKKECIQKDSELASEEAPVVVAPTLPSIQDAKLTEAENEQNKHALSLAFASAVAAGAAVAAAQAAAEVVRLTSMPHNHGLTKEEIAAIKIQTVFRGYLARRALHALRGLVRLKTIIQGQSVKRQANSTLRCMQTLARLQSQVRERRIRMSEENQALQRQLQQKHEKELEKLQASQVGEEWDDSLQTKEQIEAKVLQRQEAALKRERALAYSFSHQQTWKNSSKSVNPTFMDPNNPHWGWSWLERWMAGSIMDHNDHASVKSSASQAISTGKITKLYSPSAQKAKKPAATYNSPSTPASKAPSSSSVNGKARPSSSKGSAWGLDVDDSRSLLSVQSERYRRYSIAGSSVRDDESLASSPAFPSYMALTSSAKARSKMQRSDKGASALSARKRLSFPASPSISRRHSGPPKVEMFSKKDVATIS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2904 449 Gene3D - 88 136 - -
Lja2g2904 449 PANTHER IQ-DOMAIN 5-RELATED 1 442 - -
Lja2g2904 449 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 1 442 - -
Lja2g2904 449 MobiDBLite consensus disorder prediction 1 41 - -
Lja2g2904 449 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Lja2g2904 449 SMART iq_5 109 131 IPR000048 GO:0005515
Lja2g2904 449 Coils Coil 166 196 - -
Lja2g2904 449 MobiDBLite consensus disorder prediction 311 341 - -
Lja2g2904 449 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Lja2g2904 449 MobiDBLite consensus disorder prediction 394 449 - -
Lja2g2904 449 MobiDBLite consensus disorder prediction 304 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2904 Lja-Chr2 48463485 48468452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2904 1 438 IQD Protein Family AT5G03040 47.780 1.90e-128 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2904 - - lja:Lj0g3v0301539.1 796.964