Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2879 ATGGCTATGCTATCATCATCCTCCTCCTTTTCCTCTTCATTCACTTATGACGTGTTTCTCAACTTCAGGGGTCCTGACACTCGCCACGGCTTTACTGGAAATCTCTACAAAGCTCTATCTGATAAGGGAATTCACACCTTCTTTGATGATGAGGAGCTGAAGAGAGGGGATGAAATCACACCAACACTTACCAAGGCCATTGAAGAGTCCAGGATCGCCATCCCTATCTTCTCTATGGACTATGCTTCTTCTTCATTTTGCTTGGATGAACTTGTCACCATCATTCAGTGTGTGAAGGAAAAAGGTCGGTTAGTTTTACCGGTTTTCTATGATGTTGATCCTTCTCATGTGAGACATCAAAGAGGGACTTATGCTGAAGCATTGGCCAAGCATGAGAAGTGGTTTCAGAATAACAAGGAAAAGTTGAAGGATAACATGGAGAGGTTGCAGAAATGGAAGACAGCTCTTAACCAAGCAGCTAATTTGTCAGGCTCTCATTTCAAATCCGGGAATGAATATGAACATGAGTTTATTGGTAAGATTCTTAAAGAGATCTCAGACAGGCTTAGTCGCATTCCTTTACATGTTGCGGATTACCCTGTGGGACTAGAGTCTCGAGTGCTAGCAGTAATGTCACTTCTGGATGTTGGATCTGATGGGGTCCAAATGGTAGGGTTTTATGGAATTGGTGGAGTGGGCAAAACGACACTTGCACGAGCAGTCTATAATTTAATAGCTGACCAATTTGAATGTTTCTGTTTTCTTCATAATGTGAGAGAAAATTCGAACAAGCATGGCTTAGAACATCTTCAAGAGTATCTTCTTTCTGAAGTAGTTGGGTTGAACATTAAGTTAGGAGGTGTCACTGAAGGAATTTCAGTAATAAAGCAAAGGCTAAAGAAAAAGAAGGTTCTTTTGATTCTTGATGATGTTGACAATCTTGAACAATTGTGTTCACTAGTTGGGGAGCCTAGCTGGTTTGGTTCCGGCAGTAGAGTTATCATAACAACTCGGGACAAACATTTGCTATCAAGTTATAGGGTTGAGAGAAAATATGAGGTATATGGGTTAAGTACAAAAGAAGCTCTTGATCTGCTTAGTTGGAATGCTTTTAAAACAGATGAAGATGATCCATGTTATGAGAATGTTTTAAATCAAGCAGTAGCCTATGCTTCTTCCCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACTTATATAGAAAAAGTATACAAGAATGGAAATCTGCATTAGAACAATATGAAAGGATTCCAGATAAAAAGATCCAAAAGATACTTAAAGTGAGCTTTGATGCTCTGGAAGAAGAACAACAGAGTATTTTCTTAGACATTGCTTGTTGCTTCAAAGGATATCAATTTAAAGAGGTTGAAAACATACTCAATGCTCATCATGACCAGTGCATAAAATATCAAATTGGAGTTTTGGTTGATAAATCTCTCATAAAGATTACTCATTCGGGTCAAGTAACACTACATGACTTGATTGAGGATATGGGTAAAGAAATTGTCCGACAAGAATCACCAAAAGTGTTTGGAAAACGCAGTAGGTTATGGTCTCATAAAGATATATTTGAAGTTTTGGGAGAAAATACGGGAACAAGCAAAATCCAAATGATGCATCTTGATTACCGGTCATTTGAAGAAGTGGATTGGGATGGAGAGGCTTTCAAGAAGATGAAAACACTCAAAACACTTATTATTAGGAAATGTCATTTTTCTAAAGGTCCCAAGTATCTTCCAAATAGTTTAAGAGTACTAGAGTGGTGGAAATATCCTTTACAACATTTCCCATGTGATTTTCATCCAAAGAAACTTTCCGTATGCAAATTACCGGAGAGTAACTTTATGTCATTGGACTTGCTAAGTTCATCAAAGAAGTTCGTGACTATGAAAGTTTTAAAACTCGAGCAATGTGAATATTTAACACAAATGCCTGACATGTCTAGTCTCCCAAATTTAGAAAAGCTATCCTTTGCATATTGTACAAATTTAATTACAATGGGCCATTCAGTTTTGTCTTCGGACAAACTAAAAATCCTCAATGCTTTTGGATGCAAACAGCTTAAGAGTGTTCCACCCCTCAAGTTGCCCTCTCTTGAAAAGCTCAAGCTTTCAGGTTGTTCAAGTCTTGTGAGTTTTCCAGAAATATTAGAAAAGATGGAAAATGTAACAAAACTAAATTTACATGACACTAACATTAGGGAATTTCCATCATCATTTCAAAATCTTAGTCGACTTGGAACATTAGAAGTGACTGGCTTGCTGCCACCAAGGAGCTTAGTCATGATCCCACAAGTGGCTGAGCTATTAATCCTCGAGCCGCTAGAGGGGATTTTGGAAACACAGGAAAATGGTGAAGAAAAAGTGAGCTCAATGCTGCTATATTCAAATGTAGAATATCTTCAACTCAGAGAGTGCGTCCTGTCAGATCAACTTTTGGCAGTAGTTCTCCCATGGTTTCCTCACCTGTTAGTATTAGACCTAAGCGAGAGTCAGTTCACAATTCTTCCTGAATGCATCAAACAATGCCACTTTTTATGGAAGCTTGTCTTGGATGGTTGCAAGCAACTTCAAGAAATTGAGGGGATTCCACCAAGCTTAAAACGCTTATCTGCAATAGGATGTGAATCCTTGAGTTTCTCATGTAGAAGCATGTTGCTGAAGCAGGAAATTCATGAGGCTGGAAACACTGACTTTATTTTGCCAAGCCCAGAAACCGGAAGGATTCCAGAGTGGTTCGAGCTACAAAGCAGGGGCCCGTCTCCTTCACTTTATTTCTGGTTTCGTAACAACTTCCCTCACAACTTACTATTCGGTTTTGCCTTTCCACTCACCTTTTTGGGCAGCTTAGAACTCTGTCTTGCTTATCCACTTCCGCAAAAGATGTATCTTCCTAAAAAATGTTTCTATTTCATTGACAATGGCAAGGTTTTTATAGATCTTGATTTCTATGGATTAAGACCATTGGGGGGTTGTACACACCTTTTTAATATGCTGCCGAAGGAAGGGGAAGAGGAGGAAGAAGGGGAAGTGGAGGAAGGGGAAGAGGAAATTGGAAATGAGTGGCACCATGCAGAGGTTAGGTTTGTCAACGATGAGCAAATTAGCTCAGATGTGGAAATTGGAATCCATGTATTGAAAGAGCAAAGTAACATGGAAGATATCCGATTCACCAGTCCCTATAAAAAGAGAAAAACAGACTTGAACTTGCCAGCACTTCAAGAGAATGATGTCAATACTGAGTTGACTCTATAA 3273 0.3905 MAMLSSSSSFSSSFTYDVFLNFRGPDTRHGFTGNLYKALSDKGIHTFFDDEELKRGDEITPTLTKAIEESRIAIPIFSMDYASSSFCLDELVTIIQCVKEKGRLVLPVFYDVDPSHVRHQRGTYAEALAKHEKWFQNNKEKLKDNMERLQKWKTALNQAANLSGSHFKSGNEYEHEFIGKILKEISDRLSRIPLHVADYPVGLESRVLAVMSLLDVGSDGVQMVGFYGIGGVGKTTLARAVYNLIADQFECFCFLHNVRENSNKHGLEHLQEYLLSEVVGLNIKLGGVTEGISVIKQRLKKKKVLLILDDVDNLEQLCSLVGEPSWFGSGSRVIITTRDKHLLSSYRVERKYEVYGLSTKEALDLLSWNAFKTDEDDPCYENVLNQAVAYASSLPLALEVIGSNLYRKSIQEWKSALEQYERIPDKKIQKILKVSFDALEEEQQSIFLDIACCFKGYQFKEVENILNAHHDQCIKYQIGVLVDKSLIKITHSGQVTLHDLIEDMGKEIVRQESPKVFGKRSRLWSHKDIFEVLGENTGTSKIQMMHLDYRSFEEVDWDGEAFKKMKTLKTLIIRKCHFSKGPKYLPNSLRVLEWWKYPLQHFPCDFHPKKLSVCKLPESNFMSLDLLSSSKKFVTMKVLKLEQCEYLTQMPDMSSLPNLEKLSFAYCTNLITMGHSVLSSDKLKILNAFGCKQLKSVPPLKLPSLEKLKLSGCSSLVSFPEILEKMENVTKLNLHDTNIREFPSSFQNLSRLGTLEVTGLLPPRSLVMIPQVAELLILEPLEGILETQENGEEKVSSMLLYSNVEYLQLRECVLSDQLLAVVLPWFPHLLVLDLSESQFTILPECIKQCHFLWKLVLDGCKQLQEIEGIPPSLKRLSAIGCESLSFSCRSMLLKQEIHEAGNTDFILPSPETGRIPEWFELQSRGPSPSLYFWFRNNFPHNLLFGFAFPLTFLGSLELCLAYPLPQKMYLPKKCFYFIDNGKVFIDLDFYGLRPLGGCTHLFNMLPKEGEEEEEGEVEEGEEEIGNEWHHAEVRFVNDEQISSDVEIGIHVLKEQSNMEDIRFTSPYKKRKTDLNLPALQENDVNTELTL* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2879 1090 Pfam NB-ARC domain 209 439 IPR002182 GO:0043531
Lja2g2879 1090 Gene3D - 356 440 IPR042197 -
Lja2g2879 1090 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 164 IPR035897 -
Lja2g2879 1090 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 1034 IPR044974 GO:0006952
Lja2g2879 1090 SMART AAA_5 220 358 IPR003593 -
Lja2g2879 1090 Pfam TIR domain 16 190 IPR000157 GO:0007165
Lja2g2879 1090 SUPERFAMILY L domain-like 510 903 - -
Lja2g2879 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 450 IPR027417 -
Lja2g2879 1090 SMART till_3 15 162 IPR000157 GO:0007165
Lja2g2879 1090 Coils Coil 139 159 - -
Lja2g2879 1090 Gene3D - 193 352 IPR027417 -
Lja2g2879 1090 Gene3D - 9 192 IPR035897 -
Lja2g2879 1090 Gene3D Ribonuclease Inhibitor 784 899 IPR032675 -
Lja2g2879 1090 PRINTS Disease resistance protein signature 700 716 - -
Lja2g2879 1090 PRINTS Disease resistance protein signature 223 238 - -
Lja2g2879 1090 PRINTS Disease resistance protein signature 391 405 - -
Lja2g2879 1090 PRINTS Disease resistance protein signature 298 312 - -
Lja2g2879 1090 Gene3D Ribonuclease Inhibitor 521 777 IPR032675 -
Lja2g2879 1090 PANTHER ARCHAEAL ATPASE 26 1034 - -
Lja2g2879 1090 ProSiteProfiles TIR domain profile. 14 189 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2879 Lja-Chr2 47554489 47558702 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2879 10 757 WRKY Transcription Factor Family AT4G12020 29.036 1.92e-76 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2879 - - lja:Lj0g3v0247409.1 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2879 2 47554489 47558702 Lja2g2879 2 47554489 47558702 ECH