Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja2g2875 | ATGGCTATGCTACCATCATCCTCCTCCTCTTCCATCACCTATGCATTCTCGTATGATGTGTTCCTCAGTTTCACCGGCTGTGATACCCGCCAAGGTTTTACTGGCAATCTCTACAAAGCTCTGGATGATAAGGGAATCCACACATTTATTGATGACAAGGAGCTTCACAAAGGGGACGAAATCACCCCAGCACTTGAGGAGGCCATTGAAAAATCTAGGATTGCCATTGTTGTGCTATCTAAGAACTACGCATTTTCTTCTTTTTGCTTACATGAACTTTTGAAAATACTTGAATACTTTAAGAAAAATTGTCGCCTCGTTTGGCCTATATTTTATGATGTGGATCCGTCTGATGTGCGAAAGCAAACAGGAACGTATGGAGAAGCAATGACGTTGCATATGAATAGATTCAAAGATAACAAGGAGAAGTTGCGAAAGTGGAGGACAACTCTAGAACAAGTGGCTGATTTGTCTGGCTGGCATTTCAAACACGGAGATGGATCATATGAACACGAGTTTATTGGAAAGATTGTTTCTGAGGTCTCAAGAAATATTAATCGTGTAGCTTTACCTATTGCTGACTACCCAGTTGGACTAGACTCTCAAGTGAGGGAAGTAATTTCACTTTTGGATGTAGGATCTGATGATAAAGTTCACATTATAGGGATCCATGGAATAGGTGGGATAGGTAAAACGACACTTGCTCTAGCAGTTTACAACTTGGTTGCTGACCAATTTGAAGGTTTATGTTTTCTCGAAAATGTCAGAGAAAGTTCAAATAAACATGGGTTACTTCATGTGCAAAAAACCCTTCTTTTCGCTGTACTTGGAGAGAAGGAAATTGAGATAACAAGTGTCAAGCAGGGAATTTCAATAATAAAACATAGGCTCCAACAAAAGAAGGTTCTTCTGATTCTAGATGATGTTGCCGAGGAAGAGCACCTGAAGCAAGTTGTTGGAAGCCCTAGTTGGTTTGGTCTTGGTAGTAGAGTCATCATTACGACTCGGAATAAACACCTTCTAGAATGCTACAAGGTCGAAAGAACTCATGAAGTCGAAGAGTTGAACAAGAAGGCCTCTTTTCAATTGCTCAGATGGAAAGCTTTTAAAAATGAAGAAGTTAGACCAGGTTATGCGGACTTGTTAAACCGTGCAGTGGCGTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACTTGTGTGGAAAAAGTGTACAACAATGGAAATCTGCACTAGAACATTATGAAAGGATTCTTGATAAAAAGATTCAAAAGATACTCGAAGTGAGTTTTTATGCTTTGGAGGAAAAAGAGCAGTGTGTTTTCCTAGACATTGCTTGTTGCTTAAAAGGATATAAATTTGATGAGGTCATAAGTATACTCAATGCTCATCATGGCCAATGCATAATATATCAAATTGGAGTGTTGGTTGATAAATCTCTCATAAAGATTAATTGTTATGATCAAGTTACATTACATGACTTGATGGAACGCATGGGTAAAGAAATTGTGCGGCAAGAGTCACCAGGAGAGCCTGGAGGATGCAGCAGATTATGGTCTAAAAAAGATATATTTGAAGTTTTGGAAGAAAATACGGGAACCAACAAAATTGAAATGATACATCTTGATTACGCGTCAATTGAAGTAGTGGATTGGGAAGGAGAGGCTTTCAAGGAGATGAAAAAGCTCAAAACACTTATTATTAGAAAAAATAATTTTTCTAAAGGTCCAAAGTATCTTCCTAATAGTCTAAGAGTACTGGAGTGGTGGAAATATCCTTTACAACATTTGCCAAGTGATTTTCATCCAAATAAACTTTCCATATGCAAATTACCTGGAAGTAGCTTTATGTCTCTGGAGTTTCTATGTTTATCAAAGGTAAGTATGATAATCATTTCATATCCGCGATCTCGTGTATAA | 1929 | 0.3821 | MAMLPSSSSSSITYAFSYDVFLSFTGCDTRQGFTGNLYKALDDKGIHTFIDDKELHKGDEITPALEEAIEKSRIAIVVLSKNYAFSSFCLHELLKILEYFKKNCRLVWPIFYDVDPSDVRKQTGTYGEAMTLHMNRFKDNKEKLRKWRTTLEQVADLSGWHFKHGDGSYEHEFIGKIVSEVSRNINRVALPIADYPVGLDSQVREVISLLDVGSDDKVHIIGIHGIGGIGKTTLALAVYNLVADQFEGLCFLENVRESSNKHGLLHVQKTLLFAVLGEKEIEITSVKQGISIIKHRLQQKKVLLILDDVAEEEHLKQVVGSPSWFGLGSRVIITTRNKHLLECYKVERTHEVEELNKKASFQLLRWKAFKNEEVRPGYADLLNRAVAYASGLPLALEVIGSNLCGKSVQQWKSALEHYERILDKKIQKILEVSFYALEEKEQCVFLDIACCLKGYKFDEVISILNAHHGQCIIYQIGVLVDKSLIKINCYDQVTLHDLMERMGKEIVRQESPGEPGGCSRLWSKKDIFEVLEENTGTNKIEMIHLDYASIEVVDWEGEAFKEMKKLKTLIIRKNNFSKGPKYLPNSLRVLEWWKYPLQHLPSDFHPNKLSICKLPGSSFMSLEFLCLSKVSMIIISYPRSRV* | 643 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja2g2875 | 642 | Gene3D | - | 15 | 182 | IPR035897 | - | |
| Lja2g2875 | 642 | Gene3D | Ribonuclease Inhibitor | 524 | 637 | IPR032675 | - | |
| Lja2g2875 | 642 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 20 | 625 | IPR044974 | GO:0006952 | |
| Lja2g2875 | 642 | Pfam | NB-ARC domain | 201 | 428 | IPR002182 | GO:0043531 | |
| Lja2g2875 | 642 | PRINTS | Disease resistance protein signature | 220 | 235 | - | - | |
| Lja2g2875 | 642 | PRINTS | Disease resistance protein signature | 296 | 310 | - | - | |
| Lja2g2875 | 642 | PRINTS | Disease resistance protein signature | 389 | 403 | - | - | |
| Lja2g2875 | 642 | PRINTS | Disease resistance protein signature | 561 | 577 | - | - | |
| Lja2g2875 | 642 | PANTHER | DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) | 20 | 625 | - | - | |
| Lja2g2875 | 642 | SUPERFAMILY | "Winged helix" DNA-binding domain | 424 | 532 | IPR036390 | - | |
| Lja2g2875 | 642 | Gene3D | - | 183 | 350 | IPR027417 | - | |
| Lja2g2875 | 642 | Gene3D | - | 354 | 438 | IPR042197 | - | |
| Lja2g2875 | 642 | ProSiteProfiles | TIR domain profile. | 16 | 185 | IPR000157 | GO:0007165 | |
| Lja2g2875 | 642 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 189 | 448 | IPR027417 | - | |
| Lja2g2875 | 642 | Pfam | TIR domain | 18 | 184 | IPR000157 | GO:0007165 | |
| Lja2g2875 | 642 | SUPERFAMILY | L domain-like | 545 | 633 | - | - | |
| Lja2g2875 | 642 | Coils | Coil | 408 | 428 | - | - | |
| Lja2g2875 | 642 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 7 | 160 | IPR035897 | - | |
| Lja2g2875 | 642 | SMART | till_3 | 17 | 157 | IPR000157 | GO:0007165 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja2g2875 | Lja-Chr2 | 47375736 | 47379497 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja2g2875 | 18 | 617 | WRKY Transcription Factor Family | AT4G12020 | 30.682 | 9.39e-66 | 233 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja2g2875 | - | - | lja:Lj0g3v0327379.2 | 1251.5 |