Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2875 ATGGCTATGCTACCATCATCCTCCTCCTCTTCCATCACCTATGCATTCTCGTATGATGTGTTCCTCAGTTTCACCGGCTGTGATACCCGCCAAGGTTTTACTGGCAATCTCTACAAAGCTCTGGATGATAAGGGAATCCACACATTTATTGATGACAAGGAGCTTCACAAAGGGGACGAAATCACCCCAGCACTTGAGGAGGCCATTGAAAAATCTAGGATTGCCATTGTTGTGCTATCTAAGAACTACGCATTTTCTTCTTTTTGCTTACATGAACTTTTGAAAATACTTGAATACTTTAAGAAAAATTGTCGCCTCGTTTGGCCTATATTTTATGATGTGGATCCGTCTGATGTGCGAAAGCAAACAGGAACGTATGGAGAAGCAATGACGTTGCATATGAATAGATTCAAAGATAACAAGGAGAAGTTGCGAAAGTGGAGGACAACTCTAGAACAAGTGGCTGATTTGTCTGGCTGGCATTTCAAACACGGAGATGGATCATATGAACACGAGTTTATTGGAAAGATTGTTTCTGAGGTCTCAAGAAATATTAATCGTGTAGCTTTACCTATTGCTGACTACCCAGTTGGACTAGACTCTCAAGTGAGGGAAGTAATTTCACTTTTGGATGTAGGATCTGATGATAAAGTTCACATTATAGGGATCCATGGAATAGGTGGGATAGGTAAAACGACACTTGCTCTAGCAGTTTACAACTTGGTTGCTGACCAATTTGAAGGTTTATGTTTTCTCGAAAATGTCAGAGAAAGTTCAAATAAACATGGGTTACTTCATGTGCAAAAAACCCTTCTTTTCGCTGTACTTGGAGAGAAGGAAATTGAGATAACAAGTGTCAAGCAGGGAATTTCAATAATAAAACATAGGCTCCAACAAAAGAAGGTTCTTCTGATTCTAGATGATGTTGCCGAGGAAGAGCACCTGAAGCAAGTTGTTGGAAGCCCTAGTTGGTTTGGTCTTGGTAGTAGAGTCATCATTACGACTCGGAATAAACACCTTCTAGAATGCTACAAGGTCGAAAGAACTCATGAAGTCGAAGAGTTGAACAAGAAGGCCTCTTTTCAATTGCTCAGATGGAAAGCTTTTAAAAATGAAGAAGTTAGACCAGGTTATGCGGACTTGTTAAACCGTGCAGTGGCGTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACTTGTGTGGAAAAAGTGTACAACAATGGAAATCTGCACTAGAACATTATGAAAGGATTCTTGATAAAAAGATTCAAAAGATACTCGAAGTGAGTTTTTATGCTTTGGAGGAAAAAGAGCAGTGTGTTTTCCTAGACATTGCTTGTTGCTTAAAAGGATATAAATTTGATGAGGTCATAAGTATACTCAATGCTCATCATGGCCAATGCATAATATATCAAATTGGAGTGTTGGTTGATAAATCTCTCATAAAGATTAATTGTTATGATCAAGTTACATTACATGACTTGATGGAACGCATGGGTAAAGAAATTGTGCGGCAAGAGTCACCAGGAGAGCCTGGAGGATGCAGCAGATTATGGTCTAAAAAAGATATATTTGAAGTTTTGGAAGAAAATACGGGAACCAACAAAATTGAAATGATACATCTTGATTACGCGTCAATTGAAGTAGTGGATTGGGAAGGAGAGGCTTTCAAGGAGATGAAAAAGCTCAAAACACTTATTATTAGAAAAAATAATTTTTCTAAAGGTCCAAAGTATCTTCCTAATAGTCTAAGAGTACTGGAGTGGTGGAAATATCCTTTACAACATTTGCCAAGTGATTTTCATCCAAATAAACTTTCCATATGCAAATTACCTGGAAGTAGCTTTATGTCTCTGGAGTTTCTATGTTTATCAAAGGTAAGTATGATAATCATTTCATATCCGCGATCTCGTGTATAA 1929 0.3821 MAMLPSSSSSSITYAFSYDVFLSFTGCDTRQGFTGNLYKALDDKGIHTFIDDKELHKGDEITPALEEAIEKSRIAIVVLSKNYAFSSFCLHELLKILEYFKKNCRLVWPIFYDVDPSDVRKQTGTYGEAMTLHMNRFKDNKEKLRKWRTTLEQVADLSGWHFKHGDGSYEHEFIGKIVSEVSRNINRVALPIADYPVGLDSQVREVISLLDVGSDDKVHIIGIHGIGGIGKTTLALAVYNLVADQFEGLCFLENVRESSNKHGLLHVQKTLLFAVLGEKEIEITSVKQGISIIKHRLQQKKVLLILDDVAEEEHLKQVVGSPSWFGLGSRVIITTRNKHLLECYKVERTHEVEELNKKASFQLLRWKAFKNEEVRPGYADLLNRAVAYASGLPLALEVIGSNLCGKSVQQWKSALEHYERILDKKIQKILEVSFYALEEKEQCVFLDIACCLKGYKFDEVISILNAHHGQCIIYQIGVLVDKSLIKINCYDQVTLHDLMERMGKEIVRQESPGEPGGCSRLWSKKDIFEVLEENTGTNKIEMIHLDYASIEVVDWEGEAFKEMKKLKTLIIRKNNFSKGPKYLPNSLRVLEWWKYPLQHLPSDFHPNKLSICKLPGSSFMSLEFLCLSKVSMIIISYPRSRV* 643
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2875 642 Gene3D - 15 182 IPR035897 -
Lja2g2875 642 Gene3D Ribonuclease Inhibitor 524 637 IPR032675 -
Lja2g2875 642 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 625 IPR044974 GO:0006952
Lja2g2875 642 Pfam NB-ARC domain 201 428 IPR002182 GO:0043531
Lja2g2875 642 PRINTS Disease resistance protein signature 220 235 - -
Lja2g2875 642 PRINTS Disease resistance protein signature 296 310 - -
Lja2g2875 642 PRINTS Disease resistance protein signature 389 403 - -
Lja2g2875 642 PRINTS Disease resistance protein signature 561 577 - -
Lja2g2875 642 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 20 625 - -
Lja2g2875 642 SUPERFAMILY "Winged helix" DNA-binding domain 424 532 IPR036390 -
Lja2g2875 642 Gene3D - 183 350 IPR027417 -
Lja2g2875 642 Gene3D - 354 438 IPR042197 -
Lja2g2875 642 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Lja2g2875 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 448 IPR027417 -
Lja2g2875 642 Pfam TIR domain 18 184 IPR000157 GO:0007165
Lja2g2875 642 SUPERFAMILY L domain-like 545 633 - -
Lja2g2875 642 Coils Coil 408 428 - -
Lja2g2875 642 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Lja2g2875 642 SMART till_3 17 157 IPR000157 GO:0007165
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja2g2875 Lja-Chr2 47375736 47379497 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2875 18 617 WRKY Transcription Factor Family AT4G12020 30.682 9.39e-66 233
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2875 - - lja:Lj0g3v0327379.2 1251.5