Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2867 ATGGATTCAAAAGGGAGTTTACGTGCTACCACCTGGGCAAAGTCTTCTTCCTTAACAACCTCTGCTGAAAATGGATTACAGACAAACATATCCTCGGCGGATTCTTTCTCTTTACCGGGCTTCGGTTCGCTACATAATCAGCACAAATGGCCTGATCCCTCTATTTCAGATTATGGGGTCAGGGAAGAAGCCCCCCTACAAGGGTTCAGCCAACCTTCTCAAGCCCAGACTCTGCTTCCTTGCGACACCAACAACAAGATTAAGATCCCTGATCAAGAAAACTGTCCACTGAGTGAATCATCACAAACAAATAGACTCCAAAATTGGGATCCCAGTGTGATGTTGTATAACCTTTCCTTCTTGGAAAATAAGATTCATGAGCTTCAGGATCTAGTCCACCTGATTGTTAGTCAAAAAGACCAACCTAATGAAATTGTGACACAGGAGCAGCAGCTTATCACTACTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCAGGCAGTCTTCTCCCTTCGGTTCGGCAGACCCTTATAAATGGTAATCCTTTGGTGGGACAGCTTGGCCAACTTTGTGGAATTGCTGTTCCTTCCGGATCAGGTCCAAGTAGCAGCTGTATTCAACCACAAAATAATAACGGAAATAAACTGTCTGATCAATCCATGCAGAATGATCTACCTAGTAATCGCGAAATGGAACAAAACTACATGGAAGAACATGAATATAAAGATGAAGATGCAGATGATGGTGACAACCTTCCACCTGGTTCATACGAGATTTTACAATTAGAGAAGGAAGAAATCCTCGCACCTCATGCGCATTTCTGTACAATTTGCGGGAAGGGATTCAAGAGGGATGCGAATCTTCGAATGCACATGAGAGGCCACGGTGACGAGTACAAAACCCCAGCAGCCCTTGCGAAACCGCATAAAGAATCCGGGTCTCAACCGAAGCTTATTAAGAGGTATTCCTGCCCTTATCATGGGTGCAAGCGTAACAAGGATCACAAGAAGTTTCTACCTCTGAAGACCATTTTATGCGTCAAAAACCATTACAAAAGAACACACTGTGACAAAAGTTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCTTGGCTGATCTAAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTTCAAGGTCACACACCAGCAATTCCCTTGGATGAAAGCAAAGAAAACAATAAGGTAGGGGGTATGAACTCCTGTTTGGTGTCAAATCCTTCAACTGAAAATGGAGTTCAAAATATCATGGATGCAAGAGCTAATATTGATGATCCTATCAGTTATCTGTCATCATTGAACTTTGAAGCTAACTTTGGTGCGTTCAACGAATTCACTCGACCTCCACCTGAAGAATCAGAAAGTTCTTTCTCTTTTTTCATGCCCGGATCTTTTAAACCCGGAGGAGAATCAAGTCGTGACAATATTTTGTGA 1533 0.4227 MDSKGSLRATTWAKSSSLTTSAENGLQTNISSADSFSLPGFGSLHNQHKWPDPSISDYGVREEAPLQGFSQPSQAQTLLPCDTNNKIKIPDQENCPLSESSQTNRLQNWDPSVMLYNLSFLENKIHELQDLVHLIVSQKDQPNEIVTQEQQLITTDLTSIIVQLISTAGSLLPSVRQTLINGNPLVGQLGQLCGIAVPSGSGPSSSCIQPQNNNGNKLSDQSMQNDLPSNREMEQNYMEEHEYKDEDADDGDNLPPGSYEILQLEKEEILAPHAHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSQPKLIKRYSCPYHGCKRNKDHKKFLPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVLADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKENNKVGGMNSCLVSNPSTENGVQNIMDARANIDDPISYLSSLNFEANFGAFNEFTRPPPEESESSFSFFMPGSFKPGGESSRDNIL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2867 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 275 302 IPR013087 -
Lja2g2867 510 SUPERFAMILY beta-beta-alpha zinc fingers 274 300 IPR036236 -
Lja2g2867 510 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 497 - -
Lja2g2867 510 ProSitePatterns Zinc finger C2H2 type domain signature. 277 297 IPR013087 -
Lja2g2867 510 MobiDBLite consensus disorder prediction 1 22 - -
Lja2g2867 510 MobiDBLite consensus disorder prediction 203 227 - -
Lja2g2867 510 MobiDBLite consensus disorder prediction 479 510 - -
Lja2g2867 510 Gene3D Classic Zinc Finger 261 330 - -
Lja2g2867 510 SMART c2h2final6 275 297 IPR013087 -
Lja2g2867 510 SMART c2h2final6 362 384 IPR013087 -
Lja2g2867 510 SMART c2h2final6 324 357 IPR013087 -
Lja2g2867 510 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 497 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2867 Lja-Chr2 47014683 47016990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2867 244 510 C2H2 Transcription Factor Family AT1G34370 65.979 5.07e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g2867 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2867 - - gmx:100500526 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2867 2 47014683 47016990 Lja2g2867 2 47014683 47016990 ECH