Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2853 ATGTCCAAGTCTCGAAAGCAACCTGCGAGTAGAAGGTTAAGGCCTCAACCCTTGCCTGAGTTCAAGATGACCAGGAAACTGCGGGTGATTTATGATGACCCTTATGCAACTGAATCATCTGATGATGAGTTTGAGTACCATCATTCAAGGGAGAAGAAGCCTAGGAAAATGAAAAGATGCATCACTGAGATTCCTCTTCCTCCTCTTGTTCCTGTCATTCCTGAACCTAGCTCCTTTGCTGAGAAGAAAATTGTAAAAGATCAAGGCAACAATGTTGTTGAGGTTCACAACAAGAAGAGGGTTTCAACCCAGAACCCTTCAACAAGGAGGCAACCCTCTTGCAAATACAGAGGTGTTCGACAGAGGAAGTGGGGGAAATGGGCTGCAGAGATTCGTGACCCGTTCAAAGGTGCCCGTCTCTGGTTAGGCACTTACAACACTGCTGAAGAGGCTTCTCAAGCCTATGAGAACAAGAGGCTCGAATTTGAAGCCATGGCAAAGGCTCTTGTACCCAACAATGGTCGGTCTTCTGTTAAGGGTTCTGCTTCAAACTCTTCCTCTTCTGCTGCTGTAGGTGCTGTCAGTGCTGCTGCTCCTGCTGCTGAAGGTTCTGCATCAGAGAAATCATCTTCTGGTGCTGATGTTTCTGATAGCATGTTCTCACACCCATCACCTTCCTCTGTGCTTGATGTGGATGCCTCAGCTAACAATTTGATTGAGAATGGTGATAGTTCTAGTAATGAAGCTTCTGATGCTGAGGCCACTGAGGCCTATGACATGGTTGCTGAATTGGCTGGTCTAGAAATACCAGACTTGAGTCTTCTGACCTTGCCTCCTTCACAACCACCAACTGTTGCTGATGCTGTTGTTCCAACTGGCTCTGAGCCAAACCCTGGCTTTGATGATGATACCAACCTTGGTGGTGGCCTTGAGGATATCCCAATATTTTGGTATGACGACAATGAGCCTAGCCAGCTTCCTGATTTCGATTTTGGTGATTTTGATTCTGATGAGTTTGCTGGTTGTATTGAGGAACCCTTCCATATACCCTGCGCCTAA 1059 0.4655 MSKSRKQPASRRLRPQPLPEFKMTRKLRVIYDDPYATESSDDEFEYHHSREKKPRKMKRCITEIPLPPLVPVIPEPSSFAEKKIVKDQGNNVVEVHNKKRVSTQNPSTRRQPSCKYRGVRQRKWGKWAAEIRDPFKGARLWLGTYNTAEEASQAYENKRLEFEAMAKALVPNNGRSSVKGSASNSSSSAAVGAVSAAAPAAEGSASEKSSSGADVSDSMFSHPSPSSVLDVDASANNLIENGDSSSNEASDAEATEAYDMVAELAGLEIPDLSLLTLPPSQPPTVADAVVPTGSEPNPGFDDDTNLGGGLEDIPIFWYDDNEPSQLPDFDFGDFDSDEFAGCIEEPFHIPCA* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2853 352 MobiDBLite consensus disorder prediction 204 227 - -
Lja2g2853 352 ProSiteProfiles AP2/ERF domain profile. 115 174 IPR001471 GO:0003700|GO:0006355
Lja2g2853 352 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 302 - -
Lja2g2853 352 CDD AP2 114 155 IPR001471 GO:0003700|GO:0006355
Lja2g2853 352 Pfam AP2 domain 114 164 IPR001471 GO:0003700|GO:0006355
Lja2g2853 352 SUPERFAMILY DNA-binding domain 115 162 IPR016177 GO:0003677
Lja2g2853 352 MobiDBLite consensus disorder prediction 1 21 - -
Lja2g2853 352 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Lja2g2853 352 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Lja2g2853 352 SMART rav1_2 115 177 IPR001471 GO:0003700|GO:0006355
Lja2g2853 352 Gene3D AP2/ERF domain 114 169 IPR036955 GO:0003700|GO:0006355
Lja2g2853 352 MobiDBLite consensus disorder prediction 200 227 - -
Lja2g2853 352 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 20 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2853 Lja-Chr2 46122037 46129305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2853 25 351 AP2-EREBP Transcription Factor Family AT1G68550 34.132 5.02e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja2g2853 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2853 - - lja:Lj2g3v2902380.1 330.102