Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2852 ATGATGGAGAGGAAGCTCAGGGGTTCAGTTTTCATCTGGTGGGTTTTCTTTGCTCACCCATTATGGTGGCTCATTTCTGCTAACATGGAAGGGGATGCATTACATGGCCTCAGGACAAATTTACAAGACCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGTACGTGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTGGGAAATGCTGCTCTATCTGGTCAACTTGTTCCTCAGCTTGGCCAACTCAAGAACTTACAGTATTTGGAACTCTACAGCAATAACATTAGTGGTCCAATTCCAAGTGACTTGGGGAATCTTACTAGCTTGGTGAGCTTGGATCTGTACCTAAACCATTTCAGTGGTCCTATCCCTGATTCATTGGGCAAGCTATCCAAATTGCGTTTCCTCCGGCTTAATAATAACAGCTTGACGGGTCCTATTCCCATGCCACTAACTAATATTTCAGCTCTCCAAGTGCTGGATTTGTCTAATAACCGTCTCTCAGGTGTGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTACCAATAACTTGGATCTATGTGGCCCTGTCACTGGGCACCCTTGTCCTGGATCTCCTCCATTTTCTCCTCCTCCCCCATTTGTCCCACCGCCCCCTATCTCAACTCCAGGAGGTAGTGGTGCCACTGGTGCAATAGCGGGAGGAGTAGCTGCAGGTGCTGCTCTATTATTTGCTGTTCCTGCAATTGCGTTTGCATGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTGCCTGGTGAAGAGGATCCGGAAGTACATCTTGGGCAGCTTAAGAGATTCTCGCTACGAGAACTACAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTTGGAAGGGGAGGATTTGGTAAAGTTTACAAAGGACGCTTGGCAGATGGTACATTGGTTGCTGTGAAAAGATTGAAAGAAGAGCGCACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAAATGATCAGCATGGCTGTGCATCGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACGCCGACTGAAAGGCTCCTTGTTTATCCTTACATGGCTAATGGAAGCGTTGCCTCATGCTTAAGAGAGCGCCCAGAACATCAAAAGCCCCTTGATTGGCCATCAAGGAAACAGATAGCTTTGGGATCAGCGCGGGGTCTTTCATATTTGCATGAGCATTGTGACCCAAAGATTATTCATCGTGATGTGAAAGCTGCGAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGACTTTGGGTTGGCCAGGCTAATGGACTACAAGGACACCCATGTGACAACTGCTGTGCGGGGCACAATTGGGCACATAGCTCCAGAGTACCTATCTACTGGTAAATCTTCAGAGAAAACAGATGTCTTTGGGTATGGTATAATGCTTCTGGAGCTGATCACTGGACAAAGAGCGTTTGACCTAGCTCGGCTTGCAAATGATGATGATGTTATGTTGCTTGACTGGGTAAAAGGACTTCTGAAAGAGAAAAAACTAGAAATGCTGGTTGATCCTGATCTCCACAACAATTACATAGAAGCTGAGGTAGAACAGTTAATCCAGGTTGCACTCCTTTGCACTCAAGGTTCCCCTATGGACCGGCCTAAAATGTCAGAGGTGGTGCGTATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAATTCTCCGCCAGGAGATGGAGCTAGCCCCACATCCCAATTCTGATTGGATAGTTGACTCAACTGAAAATCTTCATGCAGTTGAGTTATCTGGTCCAAGGTAA 1881 0.4583 MMERKLRGSVFIWWVFFAHPLWWLISANMEGDALHGLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNISGPIPSDLGNLTSLVSLDLYLNHFSGPIPDSLGKLSKLRFLRLNNNSLTGPIPMPLTNISALQVLDLSNNRLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISTPGGSGATGAIAGGVAAGAALLFAVPAIAFAWWRRRKPQEFFFDVPGEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPEHQKPLDWPSRKQIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLARLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEMELAPHPNSDWIVDSTENLHAVELSGPR* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2852 626 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Lja2g2852 626 SMART serkin_6 303 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2852 626 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Lja2g2852 626 Gene3D Transferase(Phosphotransferase) domain 1 380 597 - -
Lja2g2852 626 SUPERFAMILY Protein kinase-like (PK-like) 281 578 IPR011009 -
Lja2g2852 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 626 - -
Lja2g2852 626 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 15 626 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lja2g2852 626 Gene3D Ribonuclease Inhibitor 26 213 IPR032675 -
Lja2g2852 626 ProSiteProfiles Protein kinase domain profile. 303 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2852 626 SUPERFAMILY L domain-like 31 194 - -
Lja2g2852 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Lja2g2852 626 Pfam Protein kinase domain 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2852 626 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2852 Lja-Chr2 46089028 46096548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2852 23 626 Receptor kinase-like Gene Family AT1G71830 90.397 0.0 1035
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lja2g2852 Pkinase 8.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2852 K13418 - gmx:100813918 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2852 2 46089028 46096548 Lja2g2852 2 46089028 46096548 ECH