Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2839 ATGGCCACCGTGACTACACAAGCTTCCGCCGCTGTTTTCCGGCCATGTGCTTCTAAGTCGAGGTTTCTTACCGGCTCTTCTGGTAAACTGAACAGGGAAGTGGCTTTTAGGCCAATGGGGTGTCCTCCTTCTACTTCTTTCAAGGTAGAAGCTAAGAAAGGAGAGTGGTTACCTGGCTTGGCCTCCCCAAATTACCTCAATGGCACTAAAGACCCAGAGAACTTGAAGTGGTTTGTTCAAGCAGAGCTTGTGAACGGACGATGGGCCATGTTGGGTGTTGCAGGGATGTTGCTTCCTGAGGTACTCACCAACATTGGACTCATCAATGTCCCCAAATGGTATGATGCTGGGAAAGCAGAGTACTTTGCTTCATCCTCAACCCTCTTTGTGATTGAAGATCTTTTTGTTCGGAACTTGCTTCCCACCAGAAATCAAAAACCCAACCCATTTCCATCTCAACTTCAACATTGA 471 0.4756 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVAFRPMGCPPSTSFKVEAKKGEWLPGLASPNYLNGTKDPENLKWFVQAELVNGRWAMLGVAGMLLPEVLTNIGLINVPKWYDAGKAEYFASSSTLFVIEDLFVRNLLPTRNQKPNPFPSQLQH* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2839 156 SUPERFAMILY Chlorophyll a-b binding protein 53 126 - -
Lja2g2839 156 Gene3D Chlorophyll a/b binding protein domain 27 146 - -
Lja2g2839 156 Pfam Chlorophyll A-B binding protein 68 146 IPR022796 -
Lja2g2839 156 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 136 IPR001344 GO:0009765|GO:0016020
Lja2g2839 156 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2839 Lja-Chr2 44741993 44743183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2839 56 136 Chloroplast and Mitochondria Gene Families AT3G61470 46.809 1.50e-25 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2839 K08910 - gmx:100798548 240.736