Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2835 ATGCATGACTTAATCCAAGACATGGGCAGAGAAATTGTAAGGCAAGAATCAACAAATGAGCCTGGCAGCCGCAGTAGATTATGGTTTGATGAGGATGTCATTCATGTTTTAGAAGAAAATACGGGAACTGATAAAGTTGAGTTCATAAAGCTCGATATGCACAACAACATTGAAATGCAATGGAGTGGAAATGCATTCAAGAAGATGAAAAACCTGAGAATTATGATCATTGAAAATTCAACAAAGTCTTCTATAGGCCCTGAGTATCTACCAAATAGTTTGAGAGTGCTAGCTTGGAGTTGTTATCCATCACCATCTTTACCACCTGATTTCAATCCTAAACAACTTGAGATGCTTTGTTTGCCGGAAAGTTGCATTGGATTCTTCCAACCTCCCAAGATGTTGGAGTCCTTATCTTTGATAAATTTTGATGATTGCAAGTTCTTAACCGAACTACCGAGCCTAAGTGGAGCACCATTCTTGAAGAATCTGTCCCTTGATAACTGCACGAAGTTAGTTAAAATTCATGATTCTGTTGGGTTTCTCGAGAATCTCAATTGCTTGAGCGCCAAAGGATGCACCCAGCTAGAAGTTCTGGTGCCCTGCATCAAGTTGACATCTCTTGAAATCCTGGATCTCCAGGGATGCTCATGTCTTAAGAGATTCCCGGAAGTATTGGGAAAGATGGAGAAATTAATAGAAATTAATTTAGACGACACTGCCATTGGAAAGTTTCCATCTTCCATAGGAAATCTTATTGGGCTTGAGCGACTTATCCACATGTTGCCTAAAGTCAAAGTGGAAGTGGGTTTTGGGCATGGAGGCTTTAGATTTTTTGAAGGGCACCAAGAGAAAGAAAGGTTGAGCTCAGAAGCATCTCCAAGTACAATGCTTGTATATGATGAAGCTCAGCAAGGAAGTAGTGATTTTACTACCTTTGATGTGTATTATCCGTACATGAGCTCCAATAATTTCATCCAAGTATGTAGTCCCATTCCGCTAGTGCATCATGAATTTGTAAGGTTGTTTGATGAGCTTTTAAACAACGCGATGTGGTATAAATTCCCCAAGATAGCTCTATGTTGCTGTGCAGTTCCCGCCATGAAAATGATCAAGTTGTTGGAATTCAAGTTCAGCGTGCTCATCAATGGTGTCAAACAGTTCAGTTCTTCATGTACCTATATAGCTAAATTTTCCGAGCACATACTTTGGTGTGACCTACAAGGCAATGTAGAGGGGGAATCAGCAGAGCATGAATGGAATCAAGTTGAGATTTTGTGTGAGTCGATTTACCCTGTACCAAGTTCTGAAGTGGGAATGGAATCTTTAAAGTGGAGTAGTTCTGGATGTTTATGTAGCGTACTATTTGCGGTCTACAAGGAAGGAAACAACAGGGATGATATTAAATTCGAAAATCGTGAGTCGGATTTTCCATCTCCTGTTACAAAACCAGCCATACCCGGCTGCTTTGACTACACTATTACTCCATGGATCTTATAA 1500 0.402 MHDLIQDMGREIVRQESTNEPGSRSRLWFDEDVIHVLEENTGTDKVEFIKLDMHNNIEMQWSGNAFKKMKNLRIMIIENSTKSSIGPEYLPNSLRVLAWSCYPSPSLPPDFNPKQLEMLCLPESCIGFFQPPKMLESLSLINFDDCKFLTELPSLSGAPFLKNLSLDNCTKLVKIHDSVGFLENLNCLSAKGCTQLEVLVPCIKLTSLEILDLQGCSCLKRFPEVLGKMEKLIEINLDDTAIGKFPSSIGNLIGLERLIHMLPKVKVEVGFGHGGFRFFEGHQEKERLSSEASPSTMLVYDEAQQGSSDFTTFDVYYPYMSSNNFIQVCSPIPLVHHEFVRLFDELLNNAMWYKFPKIALCCCAVPAMKMIKLLEFKFSVLINGVKQFSSSCTYIAKFSEHILWCDLQGNVEGESAEHEWNQVEILCESIYPVPSSEVGMESLKWSSSGCLCSVLFAVYKEGNNRDDIKFENRESDFPSPVTKPAIPGCFDYTITPWIL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2835 499 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 256 IPR044974 GO:0006952
Lja2g2835 499 Gene3D Ribonuclease Inhibitor 204 260 IPR032675 -
Lja2g2835 499 Gene3D Ribonuclease Inhibitor 45 203 IPR032675 -
Lja2g2835 499 SUPERFAMILY L domain-like 51 259 - -
Lja2g2835 499 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2835 Lja-Chr2 44623256 44625162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2835 135 259 WRKY Transcription Factor Family AT4G12020 35.714 1.74e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2835 - - lja:Lj0g3v0362909.4 590.112