LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g2834	ATGGCAAAGCAAGCAGCACCATCCTTGTCTTCCAACTTCAAATTTCAATGGACTTACGATGTCTTCCTCAGTTTTAGAGGTGAAGACACCAGGTTAAATTTCACAAGTCATCTCTACCATTCTCTGCGTCGAAAGGGAATTCACACTTTCTATGATGAAGATGGGCTTAAAAGAGGGGAGGAAATTACACCAGCTCTTCTCAACGCCATTCAAGAGTCTAGAATTGCAATCATTGTTTTCTCCAAGAATTATGCATCATCAACATTTTGTTTGGATGAACTTGTCAAGATTCTTGAGTCGTTGAATGTACACAGTCGATTGGTATGGCCAATTTTTTATGATGTCGATCCATCAGAAGTTCGGCATCAAACGGGGGTTTATGCAGAAGCCATGGTGAAACATGAGGAAAGGTTTCAGGATGACAGGGAAAAGGTACAAAAATGGAGGAAGGCTTTATGTCAAGCAGCTAATCTATCAGGCTGGCATTTCCAACTTGGTTCTGAACCAGAATATATGTTTATTTACAATATTGTTGAAGAGGTCTCAAAAAAGATCAATCGCACTCCTTTACATGTTGTTGATAACCCTGTTGGGCTAGACTCTGCTGTGCTAGAAGTGAGATCCCTCCTCGGAGATGGATCTGAAGTGGTCATGGTAGGCATTTATGGATTTGGTGGAATAGGTAAAACCACAATTGCTCGTGCTGTGTATAACTTGATTGCTGATCAATTTGAAGGTTCATGTTTTCTTGCTGATATCAGAGAATCGACAATTAGTAAGCATGGTCTTGTACAACTCCAAGAAATGTTACTTTCTGAAATACTTGGGGAGAAAGATATCAAAGTGGGAAATGTCAATCAAGGAATTCCAATAATAAAAAGGAGGCTTCAACAAATGAAGGTTCTTTTGGTTCTAGACGATGTTGACAAATTGGCACAGTTAAAATCACTTGCGGGAGGGTATGATTGGTTTGGCTTTGGTAGCAAGATCATTATCACAACAAGAGACAAACAGTTGCTAGCTGCTCATGGGGTAGTAAAATTGCTTGATGTTAAACCCTTATGTGATGAAATAGCTCTTGAATTGTTTAGCTGGCATGCCTTTAAAAGTAACAAAGTTGATACAAGTTGTTTGGGTATTTCTAGCCGTGCAGTTTCTTATGCATGTGGTCTTCCGTTGGCTTTGGAAGTCATAGGTTCTTACTTATTTGGGAAAAGTTTAGATGAGTGTAAGTCCGCGTTAGATAAATATGAAAGAATTCCTCATAAAGAGATCCATGAAATTCTTAAGGTAAGCTATGATGGATTGGGAGAAGATGAGAAGGGAATTTTCCTTGACATTGCTTGTTTCTTCAATAAATATGAAATTGACTATGTCAAACAAGTGCTCCAGGCTCGTGGATTTCATGTAGAAGATGGTATTAGAGTGTTGACAGATAGATCTCTTATTAAGATTGATGCTATTGGTGTTTTGAGAATGCATGACTTAGTTCAAGACATGGGCAGAGAAATTGTTAGGCAAGAATCAACAAACAAGCCTGGAAGACGTAGTAGATTATGGTTAGATAAGGATATCATTCATGTTTTGGAAGACAATATGGGAACTGACAAAGTCGAATTCATAAAGTTTGATATGCACAACAACAATGAAGTGGAGTGGGGTGGAAATGCCTTCGAGAAGATGAAAAGCCTGAGAGTTCTAATTATGGAAAATGCAGCATCTTGTACAGGCCCCAAAGATCTACCAAATAGTTTGAGGGTGCTAGATTGGAGATATTATCCATCACCATCTTTACCATCTGATTTCAATCCTAAACAACTTGTGATACTCAATATGTCTAAAAGTTGTCTTAAATTGTTCCAACCCCCCAAGATGTTGGAATCCTTGTCTTCAATAAATTTTGATGGTTGCGAGTTCTTAACTGAACTACCGAACCTAAGTGCAGCACCATTCCTGATGAATCTGTCCCTTGATAACTGCACAAGTTTAGTTACAATTCATGAATCTGTTGGGTTTCTTGAGAATCTCCGCTCTTTGAGCGCTAAAGGATGCACCCAGCTAAAAATTCTTGTTCCCTGCATCAAGTTGACATCTCTTGAAATTCTGGATCTCGAGGGGTGCTCACGTCTCAAGAGATTCCCAGAAGTATTAGAAAAGATGGAGAAAATAATAGAAATTAATTTAGACGCCACTGCCATAGGAAAATTGCCATTTTCCATTGGAAATCTTGTTGGGCTTGAACGATTATCCCTCAAGGGATGCAGAGGCCTTAATCAGCTACCGGGTAGTATCTATATATTGCCAAAAGTTGAAGTGTTAATGGGTAATGGGCATGGAGGATTTTGTGTTTTTATAGGGCATGGAGAGAAAGAAAAGATGAGCTCAGAAGTATCTTCAGATGTCATGGTTGTTTATCATGAAGCTGAAGCCAGATATGTCCTTGATGTGTATTATCCGCACATGAGCCCTGATAATGTGATTCAAGTATGCAGTCCTGATCCCCAAGTGTATCATGAGTTTAACTTGTTGTTCACTAAGCTTGCATATCACAGGGACTTGAACTCTAGATGCAAGAAAACATCAACATGTTTCTCATTCCGAAAGAAATTCCCCAAGATAGCTCTGTGTTGTCATGTAGTTCCCCATGTGAAAAGTCTCGTGCTTTTGGAATTCATGTTCAGTGTACTTGTCAATGGCAGGAAACAATTTGACTCTGCATGCACCTATGTAACTAATGGTCTATGGTGGCAAACATTTTGGTGTGATTTAAAATGCGAAGTTGAGGGGGCATTTTCAGAGAATAAATGGAATCATGTTGAGATTTTATGTGAGGCGAAATACCCCAGACCAAGTTCTGAATTGGCAATGGCCACAGAAACTTGGGTTGGAACTGGACTTTCATTAAGCTGGACCCTTGTTGGTATCTACAAGGAAGGAAACAACAAGGAAGATATTAAATTTGAAAATGGTGTGTCGCAGTTTCCATCTGCCATTAGAAAACCAGTGTATCCACTTCTACCTTCCTGCTTCTACTCATCACCACCACTGTATCCTCCTTTACCTTGCTGCTTCTATTACACTGTTGTGCAGAATGAAGTAACAGATAAATAG	3111	0.3928	MAKQAAPSLSSNFKFQWTYDVFLSFRGEDTRLNFTSHLYHSLRRKGIHTFYDEDGLKRGEEITPALLNAIQESRIAIIVFSKNYASSTFCLDELVKILESLNVHSRLVWPIFYDVDPSEVRHQTGVYAEAMVKHEERFQDDREKVQKWRKALCQAANLSGWHFQLGSEPEYMFIYNIVEEVSKKINRTPLHVVDNPVGLDSAVLEVRSLLGDGSEVVMVGIYGFGGIGKTTIARAVYNLIADQFEGSCFLADIRESTISKHGLVQLQEMLLSEILGEKDIKVGNVNQGIPIIKRRLQQMKVLLVLDDVDKLAQLKSLAGGYDWFGFGSKIIITTRDKQLLAAHGVVKLLDVKPLCDEIALELFSWHAFKSNKVDTSCLGISSRAVSYACGLPLALEVIGSYLFGKSLDECKSALDKYERIPHKEIHEILKVSYDGLGEDEKGIFLDIACFFNKYEIDYVKQVLQARGFHVEDGIRVLTDRSLIKIDAIGVLRMHDLVQDMGREIVRQESTNKPGRRSRLWLDKDIIHVLEDNMGTDKVEFIKFDMHNNNEVEWGGNAFEKMKSLRVLIMENAASCTGPKDLPNSLRVLDWRYYPSPSLPSDFNPKQLVILNMSKSCLKLFQPPKMLESLSSINFDGCEFLTELPNLSAAPFLMNLSLDNCTSLVTIHESVGFLENLRSLSAKGCTQLKILVPCIKLTSLEILDLEGCSRLKRFPEVLEKMEKIIEINLDATAIGKLPFSIGNLVGLERLSLKGCRGLNQLPGSIYILPKVEVLMGNGHGGFCVFIGHGEKEKMSSEVSSDVMVVYHEAEARYVLDVYYPHMSPDNVIQVCSPDPQVYHEFNLLFTKLAYHRDLNSRCKKTSTCFSFRKKFPKIALCCHVVPHVKSLVLLEFMFSVLVNGRKQFDSACTYVTNGLWWQTFWCDLKCEVEGAFSENKWNHVEILCEAKYPRPSSELAMATETWVGTGLSLSWTLVGIYKEGNNKEDIKFENGVSQFPSAIRKPVYPLLPSCFYSSPPLYPPLPCCFYYTVVQNEVTDK*	1037

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g2834	1036	ProSiteProfiles	TIR domain profile.	17	181	IPR000157	GO:0007165
	Lja2g2834	1036	SUPERFAMILY	"Winged helix" DNA-binding domain	423	530	IPR036390	-
	Lja2g2834	1036	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	447	IPR027417	-
	Lja2g2834	1036	Gene3D	-	354	437	IPR042197	-
	Lja2g2834	1036	Gene3D	-	15	186	IPR035897	-
	Lja2g2834	1036	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	161	IPR035897	-
	Lja2g2834	1036	Pfam	TIR domain	19	188	IPR000157	GO:0007165
	Lja2g2834	1036	SMART	till_3	18	158	IPR000157	GO:0007165
	Lja2g2834	1036	Pfam	NB-ARC domain	209	425	IPR002182	GO:0043531
	Lja2g2834	1036	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	705	-	-
	Lja2g2834	1036	Gene3D	-	187	347	IPR027417	-
	Lja2g2834	1036	SUPERFAMILY	L domain-like	541	774	-	-
	Lja2g2834	1036	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	705	IPR044974	GO:0006952
	Lja2g2834	1036	Gene3D	Ribonuclease Inhibitor	696	777	IPR032675	-
	Lja2g2834	1036	Gene3D	Ribonuclease Inhibitor	541	695	IPR032675	-
	Lja2g2834	1036	PRINTS	Disease resistance protein signature	388	402	-	-
	Lja2g2834	1036	PRINTS	Disease resistance protein signature	694	710	-	-
	Lja2g2834	1036	PRINTS	Disease resistance protein signature	218	233	-	-
	Lja2g2834	1036	PRINTS	Disease resistance protein signature	295	309	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g2834	Lja-Chr2	44594806	44599104	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g2834	13	777	WRKY Transcription Factor Family	AT4G12020	34.048	1.32e-97	338

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g2834	-		-	gmx:100802408	1256.51