Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2832 ATGGATTTCGGTGAGGGTTATGTATCAAATGAGCATCGTGAGCTTCATCGATCAGTAACCGAAAGTGCAGATCCTTTATCTGTTTCTCCATTGCAACTTGCTCCTAAGTCACCAAGATGTCCTAAATCTCCTAGGTCTCCTAAATCTCCAAGGTCCCCAAAGTTGCAAGGAAAGTGCAGCAATCTAAGTCCAAAGAATAGGCAACCACATTCTTCAAAAGATGGACGTCCAAAGAAAGGTGGTTCTGGTGGTAAAGGTACCTGGGGTGGATTGCTTGACACAGATGATATGGCTTGTCTTGACCCCAGTGATCCAAACTATGATAGCACTGAGGAAGTTGACCATTCAAATGAAAACAAAATAACAACTGATCTGGACAACTACAAGAAAAAAGCTACAATTATAGTGGAAGAATACTTTGCCACTGATGATGTTGTTGCAGCAATAAATGAACTTCGAGAGCTAGGAAAACCAGAATACAGCTACTACTTTGTCAAAAAACTTGTGTCCATGTCAATGGATAGACATGACAAGGAAAAAGAAATGGCGGCGATTCTGTTATCTGCACTCTATGCTGACATAATTCACCCTTCACAAGTTTACAAAGGCTTCAGCAAATTAGTTGAATCAGCAGATGACCTGATAGTAGATATACCAGACACAGTTGATATTCTCGCACTTTTCTTAGCTCGAGCCGTGGTTGATGACATCCTTCCTCCTGCATTTTTGAAGAAACAGACAGCATACTTGCCCAAAGATTCTAAAGGTGCTGAGGTCTTGAAGAAAGCTGAGAAAAGCTACCTAGCAGCCCCTCTGCACGCAGAAATCATCGAGCGGCGCTGGGGAGGTAGTAAGAATACAACAGTTGATGATGTCAAGACAAGAATAAACAATTTCTTGAAGGAGTATGTAGTGAGTGGTGACAAGAAAGAAGCCTTTAGATGTATCAAGGATTTGAAAGTTCCTTTCTTCCATCATGAAATAGTGAAACGGGCTCTTATAATGGCGATGGAAAGGCGCCAAGCAGAAACTCCGCTACTAGACCTGTTGAAGGAGGCAGCTGAAGAAGGTTTTATTAACACCAGCCAAATGTCTAAAGGGTTCAGTAGATTGATTGACACTGTTGATGACTTATCACTCGACATACCGAATGCGCACGGAATACTGCAGGAACTAATGTCTAAAGCAGCATCTGAGGGTTGGTTGTGTGTGTCATCTTTGAAACCACTTACAGTGGAGCCTGAAAAGAATTCAATCAAAGACAGTGCTGCTAGAAGTTTTAAGCTAAAGACTCAGTCCATCATTCAAGAGTACTTTTTATCAGGTGACATATTGGAGGTAACTAGTTGTCTAGAACAAGAGAACAACAAAAACTGTGCTGAACTCAATGCAATCTTTGTTAAGAAACTAATAACTTTAGCAATGGATAGAAAGAATAGGGAGAAGGAAATGGCCTCTGTGTTGCTTTCATCATTGTGTTTCCCAGCTGATGATGTTGTGAGTGGTTTTGTGATGTTGATAGAGTCAGCAGATGACACTGCTCTTGACAACCCTGTAGTTGTTGAGGATCTGGCTATGTTTCTAGCTAGAGCAGTGGTAGATGAAGTCCTGGCTCCACAACACCTTGAAGAGATTGGAACACAATTTTTAGGGCCAGACTCAGTTGGCAGCAAAGTTCTTCGAATGGCAAAGTCATTACTAAAGGCTAGACTTGCCGGCGAGCGAATTTTGAGGTGTTGGGGAGGCGGCGGAAGCAGCAGGCCAGGATGGGCAGTTGAGGATGTCAAGGACATGATCGGAAAGCTTTTGGAGGAGTATGACTCTGGAGGTGACATACGCGAGGCTTGTCGCTGCATGAAAGAGTTAGGTATGCCGTTTTTCCACCACGAGGTTGTTAAGAAAGCTCTGGTGACAATCTTTGAAAAAAAGAATGAGCGGTTATGGGGTCTGCTCAAGGAGTGTTTCGAATCAGGGTTAATAACCATGAATCAGATGGCGAAGGGTTTTGAAAGGGTTTCAGAGTCTCTTGATGACTTGGCTTTGGATGTCCCAGATGCTAAAAAACAGTTTGCACACTATGTTGAAAGAGCAAAGACTGAAGGATGGTTGGACAGTTCATTTTGTTCCAGCAATTTGGAACATTCCACAGAGAATGGCACTTGA 2163 0.4267 MDFGEGYVSNEHRELHRSVTESADPLSVSPLQLAPKSPRCPKSPRSPKSPRSPKLQGKCSNLSPKNRQPHSSKDGRPKKGGSGGKGTWGGLLDTDDMACLDPSDPNYDSTEEVDHSNENKITTDLDNYKKKATIIVEEYFATDDVVAAINELRELGKPEYSYYFVKKLVSMSMDRHDKEKEMAAILLSALYADIIHPSQVYKGFSKLVESADDLIVDIPDTVDILALFLARAVVDDILPPAFLKKQTAYLPKDSKGAEVLKKAEKSYLAAPLHAEIIERRWGGSKNTTVDDVKTRINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAETPLLDLLKEAAEEGFINTSQMSKGFSRLIDTVDDLSLDIPNAHGILQELMSKAASEGWLCVSSLKPLTVEPEKNSIKDSAARSFKLKTQSIIQEYFLSGDILEVTSCLEQENNKNCAELNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGTQFLGPDSVGSKVLRMAKSLLKARLAGERILRCWGGGGSSRPGWAVEDVKDMIGKLLEEYDSGGDIREACRCMKELGMPFFHHEVVKKALVTIFEKKNERLWGLLKECFESGLITMNQMAKGFERVSESLDDLALDVPDAKKQFAHYVERAKTEGWLDSSFCSSNLEHSTENGT* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2832 720 ProSiteProfiles MI domain profile. 291 412 IPR003891 -
Lja2g2832 720 PANTHER PROGRAMMED CELL DEATH 4 1 713 IPR039778 GO:0045892
Lja2g2832 720 SUPERFAMILY ARM repeat 424 584 IPR016024 -
Lja2g2832 720 ProSiteProfiles MI domain profile. 594 713 IPR003891 -
Lja2g2832 720 SUPERFAMILY ARM repeat 288 408 IPR016024 -
Lja2g2832 720 MobiDBLite consensus disorder prediction 1 20 - -
Lja2g2832 720 Pfam MA3 domain 596 704 IPR003891 -
Lja2g2832 720 Pfam MA3 domain 293 402 IPR003891 -
Lja2g2832 720 Pfam MA3 domain 428 537 IPR003891 -
Lja2g2832 720 Pfam MA3 domain 129 239 IPR003891 -
Lja2g2832 720 MobiDBLite consensus disorder prediction 49 68 - -
Lja2g2832 720 ProSiteProfiles MI domain profile. 426 547 IPR003891 -
Lja2g2832 720 PANTHER MA3 DOMAIN-CONTAINING PROTEIN 1 713 - -
Lja2g2832 720 SMART ma3_7 427 538 IPR003891 -
Lja2g2832 720 SMART ma3_7 128 239 IPR003891 -
Lja2g2832 720 SMART ma3_7 595 704 IPR003891 -
Lja2g2832 720 SMART ma3_7 292 403 IPR003891 -
Lja2g2832 720 SUPERFAMILY ARM repeat 591 710 IPR016024 -
Lja2g2832 720 Gene3D - 416 570 - -
Lja2g2832 720 Gene3D - 115 268 - -
Lja2g2832 720 MobiDBLite consensus disorder prediction 1 115 - -
Lja2g2832 720 ProSiteProfiles MI domain profile. 127 248 IPR003891 -
Lja2g2832 720 SUPERFAMILY ARM repeat 125 285 IPR016024 -
Lja2g2832 720 Gene3D - 278 408 - -
Lja2g2832 720 Gene3D - 578 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2832 Lja-Chr2 44555403 44560588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2832 602 694 Eukaryotic Initiation Factors Gene Family AT4G30680 31.250 9.16e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2832 - - gmx:102668745 1211.05