Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2824 ATGAGAAGACGAGTCAGAGAGCTTCTGAGCTTCTCGTATTTTCTGCACTCTCCAGGGAAGCGTAACCCACTCTCAAAACCAGCACCACCACCATCACACAATGCTAGTTTTCAAGGCTCCACCAGTACTTTCTCAACATCTTCCAAGTCCCAAAGGGATTCACTGCTTTTGGAACAGTTCAAGCAAAGGAAACTCAAAGGGTCCTCCTCAAAAGACCTAAAGGTGGATACTGCTGTTACTGCTGGTGAGAAGAAGGTGGTCCAAAAGGGTTTGCAGAATGAGAGTGAACCCACAATGGTGGTTGCAAATTTTAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTGAGGTCATGGATGGGATTGGTGAATTTGTTCCTAGTGAGATACAGTGTGTGGTTATTCCAGCTATTTTGGAAGGAAAAAGTGTGCTCTTGAGTTCACCCTCTGATCATGACAGGACTTTGGCCTACTTGTTGCCCCTTATTCAGCTGCTAAGACGGGATAGAGAGTTGCTTAGTTCAAATTCAAAGCATCCTCGAGCCATTGTGCTTTGTGCTTCGGAGGAGAAAGCTGCACAGTGCTATAATGCTGCACAATACATCATCCATGATGCAGAATTGAAGTCTGCAAAGAACTGTGCTTCAGCGACCAGCGAGCAATCAAATTCCTCAATCGGACTCATGATTGGAACTCCTTGTGAGGTTCTTCAATACATTCAAGAGGGGAATGTTGTTCCTGCTGAATTAAGATACTTGGTATTGGATGGCATGGATTGCTTGCTTAATAGTGGCCATAGTCCTGAAATCCATAAAATTCTCAAACCATTACAAGATCATGGATCAACATCTACTGTCAAAAGATTGCAAACTATTTTGGCAATTTCAACCATTGCTGAGGTTTTGGGTGAAGAATCCCCCCTTGTAAAGCGTCTAGAGCGTGATCATGCAGGAAATATTTCAGCGATGTCTTTAGAAATGGAGCCAACAGAAGTCTTTGATTTCTCTGAGTCTTTGGAAGCTCTTAGAAAAAAAGTGGCGGAGGCCATGAATTCCCTTTTGAAATAA 1062 0.435 MRRRVRELLSFSYFLHSPGKRNPLSKPAPPPSHNASFQGSTSTFSTSSKSQRDSLLLEQFKQRKLKGSSSKDLKVDTAVTAGEKKVVQKGLQNESEPTMVVANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPLQDHGSTSTVKRLQTILAISTIAEVLGEESPLVKRLERDHAGNISAMSLEMEPTEVFDFSESLEALRKKVAEAMNSLLK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2824 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 290 IPR027417 -
Lja2g2824 353 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 22 353 - -
Lja2g2824 353 Gene3D - 60 300 IPR027417 -
Lja2g2824 353 MobiDBLite consensus disorder prediction 19 50 - -
Lja2g2824 353 SUPERFAMILY PABC (PABP) domain 298 349 IPR036053 GO:0003723
Lja2g2824 353 Pfam DEAD/DEAH box helicase 127 291 IPR011545 GO:0003676|GO:0005524
Lja2g2824 353 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 22 353 - -
Lja2g2824 353 MobiDBLite consensus disorder prediction 31 50 - -
Lja2g2824 353 SMART poly_2 292 351 IPR002004 GO:0003723
Lja2g2824 353 Coils Coil 337 353 - -
Lja2g2824 353 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 314 IPR014001 -
Lja2g2824 353 Pfam Poly-adenylate binding protein, unique domain 305 349 IPR002004 GO:0003723
Lja2g2824 353 Gene3D - 301 353 - -
Lja2g2824 353 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 279 353 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2824 Lja-Chr2 44330003 44332324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2824 283 351 Eukaryotic Initiation Factors Gene Family AT2G23350 43.836 3.38e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2824 - - gmx:100800575 458.759