Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2823 ATGCTCCTCCTGAAAGGATCACTCTATCTGAGCCTAAAACCCTTAAACAGAGTTAAGCGCTGCCACAACACAAGAGCTCCTTCAATGGCGGGAGCTACAGGAAGAACCCTCTTCACACTCTCTCTCTCCTCCAACCTCACCACACGCCTCTCTCGTCATGCCAAGCGCTTCCCATTTCTCACGCCATCGAACCCCATCACCGTTTTGCCACGGTTCAGGCCTCTCTCTTCCATCGCCGCACCAGAAGTTGCGGCGGAACCTGACCAGATGAAGCACTCCATGCTCCTCGAGAGGCTCAGAAGCAGGCACCTCAAGGACAGTGCTAAAACCCCAGAAGCCAAGAATCCCCCAAAGAAGGGTGCTGCGAGGAAATCTGAGGAGGAGGAGAAGAAGAAAGTGGCGGTTGCTGGGAGTTTTGAGGAGTTGGGAATCGGTGATGAGGTTATGGGTTCTGTTAGGGAAATGGGTATTGAAGTTCCCACTGAGATACAGTGTATTGGTGTCCCTGCTGTGTTGGAAGGGAAGAGTGTGGTTTTGGGGTCTCATACTGGATCTGGCAAGACCCTGGCTTACTTGCTTCCCCTTGTTCAGTTGCTAAGACGGGATGAACAATTGAATGGAGTACTGATGAAGCCTAAACGTCCCCGAGCTGTTGTGCTATGTCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCAATAAGCCATCATGCAAGATTCAGGTGTACCATGGTAAGTGGTGGTGGTCGTATTCGGCCTCAGGAGGATTCACTTAATCACCCCATTGATATGGTGGTTGGTACTCCTGGCAGGATTCTTCAACACATTGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATAAGGGTTTTGGTCCTGATATACGCAAATTTATTGGCCCATTAAAGCATCGTTCTTCAAAGTCTGAGGGGCTAGGTTTTCAGACTGTCTTGGTCACTGCAACCATGACAAATGCTGTGCAAAAGCTGGTTGATGAGGAGTTTCAAGGCATTGAACATCTGCGCACATCAACGTTGCATAAAAAGATTTCTACTGCTCGCCATGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTGGATGCATTACTTCAGGTATTAGAGCCAAGTCTAGCAAAGGGGAATAGGGTGATGGTTTTCTGCAATACATTGGATTCAAGCCGTGCTGTGGATCACTATCTTGATGAAAATCTGATTTCTACTGTGAACTACCATGGGGAGGTACCGGCAGAACAAAGGGTTGAAAATCTCAAAAAATTTAAGAGTGACAATGAAGATTGCCCTACACTGGTTTGCACAGACTTGGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCAAGGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGAATGGGCGCAAAAGGGAAAGTAACAAGTTTGGTTGCTAAAAAGGACTTGAACTTGGCAGCCAAAATAGAGGAGGCAATAAGAAAGAATGAGAGTTTGGAGGGTATCACTAAAGAAAGTGTACGAAAGGACATTACGCGGACCCAAATCACTGAGCTGAGGGGAAAGAACAAAAACTTGGTAAGAGTTTCAAAAGTTAAGGACAAATCTGGTGGCCACGCCAGTTCTGGGAATTCCAGGGCAGGTATGCAATCTGGCAAAGGATCACCACCAGCTAAGTCGGTGAAGAAAGGGATTAACGTATCAAAATCCGGTGACCGTGCCTGTTCTGGGAATGCTGGGTCAGGTGTGAAATCTGGTAAAGGATCACGACCAGCAAAATCTACAAAGAGAGGGATTAACGTATCAAAGCCTGTAAGATCTTCCAGTGGAAATAGCTCAAGTAAAGGTTCTTCAGAGGGTAAGCAAACAAGGAAAAAGACGAGTGCCACCAAATCTACAAATTCTAAACTCAGTGTTGTGGGGTTTAGGGGGCGGAATTCATCATCAAATAACAAGCCATCTTCTTTGTGA 2037 0.462 MLLLKGSLYLSLKPLNRVKRCHNTRAPSMAGATGRTLFTLSLSSNLTTRLSRHAKRFPFLTPSNPITVLPRFRPLSSIAAPEVAAEPDQMKHSMLLERLRSRHLKDSAKTPEAKNPPKKGAARKSEEEEKKKVAVAGSFEELGIGDEVMGSVREMGIEVPTEIQCIGVPAVLEGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGVLMKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNHPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDKGFGPDIRKFIGPLKHRSSKSEGLGFQTVLVTATMTNAVQKLVDEEFQGIEHLRTSTLHKKISTARHDFIKLSGSENKLDALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHYLDENLISTVNYHGEVPAEQRVENLKKFKSDNEDCPTLVCTDLAARGLDLDVDHVVMFDFPRNSIDYLHRTGRTARMGAKGKVTSLVAKKDLNLAAKIEEAIRKNESLEGITKESVRKDITRTQITELRGKNKNLVRVSKVKDKSGGHASSGNSRAGMQSGKGSPPAKSVKKGINVSKSGDRACSGNAGSGVKSGKGSRPAKSTKRGINVSKPVRSSSGNSSSKGSSEGKQTRKKTSATKSTNSKLSVVGFRGRNSSSNNKPSSL* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2823 678 SMART helicmild6 409 491 IPR001650 -
Lja2g2823 678 MobiDBLite consensus disorder prediction 622 640 - -
Lja2g2823 678 Gene3D - 361 566 IPR027417 -
Lja2g2823 678 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 355 IPR014001 -
Lja2g2823 678 MobiDBLite consensus disorder prediction 102 132 - -
Lja2g2823 678 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 533 IPR001650 -
Lja2g2823 678 MobiDBLite consensus disorder prediction 547 678 - -
Lja2g2823 678 Gene3D - 101 353 IPR027417 -
Lja2g2823 678 MobiDBLite consensus disorder prediction 649 678 - -
Lja2g2823 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 502 IPR027417 -
Lja2g2823 678 Pfam Helicase conserved C-terminal domain 380 491 IPR001650 -
Lja2g2823 678 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Lja2g2823 678 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 64 567 - -
Lja2g2823 678 SMART ultradead3 156 365 IPR014001 -
Lja2g2823 678 CDD SF2_C_DEAD 368 500 - -
Lja2g2823 678 CDD DEADc 148 347 - -
Lja2g2823 678 Pfam DEAD/DEAH box helicase 161 344 IPR011545 GO:0003676|GO:0005524
Lja2g2823 678 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 64 567 - -
Lja2g2823 678 MobiDBLite consensus disorder prediction 559 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2823 Lja-Chr2 44310017 44318175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2823 138 513 Eukaryotic Initiation Factors Gene Family AT3G19760 28.385 1.15e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2823 - - vun:114182370 880.937