Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2816 ATGGGTCGTGCAAAAGTAATTTTGAAACCAATCGAAAAGAAGAATGCTCGTAGATTGACTTTCAGTCAAAGAAAGAAGGGACTTATTAAGAAAGTTTCTGACTTTCACAAATTTTGTGGAAACGAAGCATGCTTAATTGTGTATGATGGTGATGGTACTGGTGAACCTGAGGTTTGGCCTCCAGAACCTTCAAAAGTGCACTCAATCCTTGAGAAGTATGAGCACCAAAGGAGTAGCAAAGATAGACCTGCTACTAAGACATTTGATCTGGAAAATTTCTTTGACAATAGGAAAGTGATGGTTGAAGCTGAGATTGCTAGAGTGAAGAAGGAGATTTTTAAGATGAAATATCCAACTTGGGATCCATGTTTCAATGAGCTGACAATGGAGCAACTGAGTTTCTTCATGGCTAAGCTGAGTGCAAAGATAGAAGCTTGTGATCATAGGATTGATATGTTGAAGAAGGAGCGTCAAAGCGAAGCCGTTGTTACTGCTTTCGATAACATGCAAAACATGGCTCAGGAGAGTGCTGAAACCTCAAATCATAGCCAACTTAATTCCATGTTGAACATCTCTGAAGGACAACTTGTACGTGCTTCTTCTATGAAGTCACTAAATGATAATAATGTGATGGTGGATTCAACTTATCAAGTAGATGCTACAACTGCCACCAGCTTCGGTAGCGTGCAAAACATGGCTCAAGAGAGTGCTGAATCCTCAAATCCAAGCCAACTTAATTCCATGGTGAACATCTCTCACGACCAACTTGTCCCTGCTCCTATGAAGCCACTTAATGATAATAGTGTCATGGTGGATCCAACTAATGAAGTAGATACTACGGAAGTCGTCGCCTTCAGTAGCATGCAAAACATGGCTCAGAAAAGTGTTGAATCCTCAAATCCTTGCCAACTGAATTCCATGTTGAATAACATCCCTCAAGGCCAACTTGTTTCTGCTCCAACGAAGAAGCCACTAAGTGATAATAGTGGGATGGTGGATTCCACTGTTGAAGTAAATGTGCCTCTAGATTCAACAGACCCACTTGATGATGTGGATTGGGTTGAACTAGGGCCTATGAATTGGTGTAATGGTTCTACTAACTATCAAAGTGATCTTATGTTTCGAGCCAGCCAACTCGATGAGTCTATCTTTCAGAATATGCCATTTTAG 1170 0.4077 MGRAKVILKPIEKKNARRLTFSQRKKGLIKKVSDFHKFCGNEACLIVYDGDGTGEPEVWPPEPSKVHSILEKYEHQRSSKDRPATKTFDLENFFDNRKVMVEAEIARVKKEIFKMKYPTWDPCFNELTMEQLSFFMAKLSAKIEACDHRIDMLKKERQSEAVVTAFDNMQNMAQESAETSNHSQLNSMLNISEGQLVRASSMKSLNDNNVMVDSTYQVDATTATSFGSVQNMAQESAESSNPSQLNSMVNISHDQLVPAPMKPLNDNSVMVDPTNEVDTTEVVAFSSMQNMAQKSVESSNPCQLNSMLNNIPQGQLVSAPTKKPLSDNSGMVDSTVEVNVPLDSTDPLDDVDWVELGPMNWCNGSTNYQSDLMFRASQLDESIFQNMPF* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2816 389 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja2g2816 389 PANTHER PROTEIN, PUTATIVE-RELATED 3 213 - -
Lja2g2816 389 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lja2g2816 389 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lja2g2816 389 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Lja2g2816 389 Coils Coil 136 156 - -
Lja2g2816 389 PANTHER MADS BOX PROTEIN 3 213 - -
Lja2g2816 389 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Lja2g2816 389 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2816 Lja-Chr2 44034049 44035218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2816 1 149 Type I MADS-box Gene Family AT5G55690 33.117 1.08e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja2g2816 SRF-TF 7.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2816 - - lja:Lj0g3v0112959.1 576.63