Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2810 ATGGAGCAAGGCCTCCATCATCTTGTGCTTGTTCTCACAACATGCGATCCCATTGGAGCCTCCAGTCCTGGCCTTAACATATTCCATCAACAACAACAACAACCCCTACTCCAGCAACACCAACCCCAAGTACCCAAGACCAGTTCTGTAGCTCTACCAACTCATGTTCCCCAAACAAGTCCTATGGGTCAGCCAAACGTCCAACACCAAGTACCCCAAACCAATCTTGTGGCTTTGTCAAAGACCAAAACCCAAGCACCCAAACGAAGAAGGTTAACAGATCAGATGAAAACAGTTCGGCAGATGACCACTGACAAAATATCAAATGATATGTGGGCATGGAGAAAATATGGACAAAAACCCATCAAAGGTTCTCCGCATCCAAGGAGTTATTACAAATGTCGCAGCATGAAAACATGTGACGCGAAAAAGCTAGTGGAGCGAAGCAAAACAGACCCGAGCATGTTTATTGTGACATACGTCGGGGATCACGATCACAGGAATCCGCCTCACCAGAACATGCTTTGCGGCACCTCACAGCTCAATCCATTAGCGACCCATTTACCCAGCACATCGCAAACCAAGACACCCACCAACATTGGAAGCGTTAGTTTATCTGGTATTTCTCCCATGCTGGTGTCAGGTCTGCTGGAGAACGGTGACAAAATAGTAAATCATGGAAAACCTGAAGGCCTTGACCCGGGAATAGAACCTAAGCCAATCACCGATGATGATGATGATGACATTCTAATACCCATATCAGATCTGCTGGAGAACGGTGACAAAATGATTAACCATGGAGTACCTGAAAGCCCTAACCTAGAAATGGAACCTAAATCAGTCTCCGATGAAGATGATGACATTCTAATACCCAATTTAGCTGCCATGTCAAACATCTTCGAAATGGGATATCAATCTTTTGACGTTGGAGCCATCTACATGGGCTAG 948 0.4557 MEQGLHHLVLVLTTCDPIGASSPGLNIFHQQQQQPLLQQHQPQVPKTSSVALPTHVPQTSPMGQPNVQHQVPQTNLVALSKTKTQAPKRRRLTDQMKTVRQMTTDKISNDMWAWRKYGQKPIKGSPHPRSYYKCRSMKTCDAKKLVERSKTDPSMFIVTYVGDHDHRNPPHQNMLCGTSQLNPLATHLPSTSQTKTPTNIGSVSLSGISPMLVSGLLENGDKIVNHGKPEGLDPGIEPKPITDDDDDDILIPISDLLENGDKMINHGVPESPNLEMEPKSVSDEDDDILIPNLAAMSNIFEMGYQSFDVGAIYMG* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2810 315 ProSiteProfiles WRKY domain profile. 103 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g2810 315 SMART WRKY_cls 108 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g2810 315 SUPERFAMILY WRKY DNA-binding domain 101 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g2810 315 Pfam WRKY DNA -binding domain 109 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g2810 315 Gene3D WRKY domain 93 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g2810 315 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 22 301 IPR044810 GO:0003700
Lja2g2810 315 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 22 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2810 Lja-Chr2 43814300 43829103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2810 80 183 WRKY Transcription Factor Family AT4G01250 50.000 7.30e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja2g2810 WRKY 3.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2810 K13425 - aprc:113866622 190.274