Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2807 ATGTTCCCTACATTTTCATTTTGGTTATATCTTCTCTTTACTTTCCACTTTGGCCCAAAAACAGCTGACTCTACATTAGGAAACCCTACTGACCATTTGGAATTGATCAAATTCAAAGAATCCATATCCAAAGATCCATTTGGAATCTTGGTTTGTTGGAATAGTTCAACCCACTTCTGTGACTGGCATGGAATCAAATGCAGCCCCAAGCATCAAAGAGTTACAGAGTTGAACCTAGAAGGATATGATTTGCATGGATCCATATCTTCCCATGTTGGCAATCTCTCTTTCCTGAGAATCCTGAACCTCGCCAACAACAGCTTCTTCGGAAAAATCACACAAGAGGTGGGGGAGATTCCTATGAACTTAACAAGGTGCTCAGGACTCAAAGGCTTATACTTAGCGGGAAATAAACTGATTGGAAAAATTCCAATTGAAATTGGTTCTCTTTGCAAGCTTCAAAAATTTAGCGTTGCAAAGAACAATTTAACAGGAGTAGTGCCACAATTCATAGGGAATTTTTCATCCTTAACTGCTCTCGGGCTGGGTTTCAATAACCTAGAGGGAAATATTCCACAAGAAATATGTAGACACAGAAGCTTGATATGGATGTCCACAGAAAGCAAAAAACTTTCAGGTGCATTTCCTTCTTGTCTGTATAACATGTCAACTCTTACTAAAATCTCAGTTTCAGGCAATGAATTAACCGGCTCTCTTCCATCCAACATGTCCTTTACATTGGTGATAATAAAATCTCTGCTACAAGACCTTTGTCGGTTAAATTTGGAATTGAACAATTTAGGTGGCAATTCCACTAAGGATTTGGATTTTTTAACATCATTGACAAATTGTAGCAAGTTGGAAAAAATATCTATAGCCTCTAATAACTTCGGAGGCAGTTTGTCGAATTCCTGCGGCAATCTGTCCACCCAACTAAGACTGCATTACCTTGGAGGTAATCAGATAACAGGAAAAATTCCTATAGAATTAGGAAATTTAAATAGCTTAATTCTCTTGAGTATGGACAGCAACCATTTTACAGGGATTATTCCGAAAACTTTTGGCAATTTGCAGAAGATGCAAGTATTAGGTTTGCACCATAACAAACTTTCAGGAGATATACCAGCCTTCATAGGTAATCTCAGTAAGTTGATTCATTTGGGTCTGAAAGATAATATATTAGAAGGAAAAATTCCCCCAAGCATAGGAAATTGCCACAAGTTGCAGCACCTAGACCTTTCGCAAAACAAGCTTAGAGGAACCATACCCTTTGAAGTTTTTAGCCTGTCTTCTTTAACAAGATTATTGAATTTGTCTCAAAACTCATTGAGTGGCAATCTACCTGATGAAGTGGGTAGGCTAAAAAATATCGATTGGCTGGATGTCTCTGAGAATCATCTTTCTGGTAGCCTTCCTGAAACAATTGGAGGATGCATAAGCTTGGAGTACCTTTATTTGCAAGGGAATTCCTTCCATGGAATTGTGCCATTCTCTTTGACTTCACTTAAAGGTCTTCAACGTTTAGACCTATCGCGAAACAACTTGTCTGGATCAATTCCTAATGGTTTGCAGAACATTAAATATTTAGAATACTTGAATGTTTCTTTTAACAAGTTGGATGGTGAAGTGCCAACAGAAGGCGTCTTTCAAAATGCAAGCGCGTTAGCAGTGTTTGGAAACAAAAACCTTTGTGGAGGTATTTCAGAGCTGCATCTACCGCCTTGCCCTGTCAAAGGTGTGAAACCTGCAAAACACCATGATTTCAAGTTGATAGCAGTGATAGTTAGTGTGGGTGCCTTTCTTCTCATACCGTCATTTATTCTAACCATCTACTGGATGAGAAAAAGAAACAAGAAACCATCTTTTGATTCCCCAACAATTGACCAGTTAGCTAAGGTTTCATACCGAGGCTTACATCATGGAACCGATGGGTTCTCAGCCAGAAACCTGATTGGATCAGGAGGTTTTGGTTCTGTGTACAGAGGAAACCTTGTGTCAGAAGATAGAGTTGTTGCCATAAAGGTCTTGAATCTTCAAAAGAAGGGAGCTAACAAGAGTTTCATTGCTGAGTGTAATGCACTTAAAAATATTAGACACCGAAATCTGGTAAAGATTTTGACATGTTGCTCCAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTTGTTTTCGAGTACATGAAAAATGGAAGCTTAGAGCAATGGCTGCATCCAACAACCAAAATTGAAGATCAACAAAGATCATTGAACCTTGAACAAAGGCTAAATATCATAATTGATGTTGCTTCAGCATTTCATTATCTTCATTACGAATGTGAGCAGCCTGTCATTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGAATGCATGGTAGCTCATGTGAGTGAATTTGGGTTAGCAAAATTGCTCCCTTTTTTTGGAGTCTCACAGATGCAAAGTAGCACAGTTGGAATAAAGGGGACGGTTGGCTATACTCCTCCAGAGTATGGAATGGGTTCAGAGGTGTCAATTGAGGGTGACATGTATAGCTTTGGAATTCTGGTTTTAGAAATATTAACTGGAAAGAGTCCCACTGATGAAATGTTCAAAGATGGTCATAATCTCCATAATTATGTTGAACTTTCAATTTCAGAAAGTCTTTTGCAAATTGTAGACCCGATTATTCTCCTCAATGAATTCAATCAGGCTACTGAGGATTGTAACCTTGGCATTATGCAGTTGCAACCTAATGCCGAGAAATGCTTACTTTCACTTTTGAGAATTGCTCTTGCATGTTCAATGCAATCACCAAAAGAAAGAATGAGTATGGTTGATGTCATAAGAGAGCTTAACTTAATCAAAAGTTTCATCCCTACTGTGGTTAGACAGAGGCAGATTGCATAA 2889 0.3835 MFPTFSFWLYLLFTFHFGPKTADSTLGNPTDHLELIKFKESISKDPFGILVCWNSSTHFCDWHGIKCSPKHQRVTELNLEGYDLHGSISSHVGNLSFLRILNLANNSFFGKITQEVGEIPMNLTRCSGLKGLYLAGNKLIGKIPIEIGSLCKLQKFSVAKNNLTGVVPQFIGNFSSLTALGLGFNNLEGNIPQEICRHRSLIWMSTESKKLSGAFPSCLYNMSTLTKISVSGNELTGSLPSNMSFTLVIIKSLLQDLCRLNLELNNLGGNSTKDLDFLTSLTNCSKLEKISIASNNFGGSLSNSCGNLSTQLRLHYLGGNQITGKIPIELGNLNSLILLSMDSNHFTGIIPKTFGNLQKMQVLGLHHNKLSGDIPAFIGNLSKLIHLGLKDNILEGKIPPSIGNCHKLQHLDLSQNKLRGTIPFEVFSLSSLTRLLNLSQNSLSGNLPDEVGRLKNIDWLDVSENHLSGSLPETIGGCISLEYLYLQGNSFHGIVPFSLTSLKGLQRLDLSRNNLSGSIPNGLQNIKYLEYLNVSFNKLDGEVPTEGVFQNASALAVFGNKNLCGGISELHLPPCPVKGVKPAKHHDFKLIAVIVSVGAFLLIPSFILTIYWMRKRNKKPSFDSPTIDQLAKVSYRGLHHGTDGFSARNLIGSGGFGSVYRGNLVSEDRVVAIKVLNLQKKGANKSFIAECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMKNGSLEQWLHPTTKIEDQQRSLNLEQRLNIIIDVASAFHYLHYECEQPVIHCDLKPSNVLLDECMVAHVSEFGLAKLLPFFGVSQMQSSTVGIKGTVGYTPPEYGMGSEVSIEGDMYSFGILVLEILTGKSPTDEMFKDGHNLHNYVELSISESLLQIVDPIILLNEFNQATEDCNLGIMQLQPNAEKCLLSLLRIALACSMQSPKERMSMVDVIRELNLIKSFIPTVVRQRQIA* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2807 962 SMART LRR_typ_2 357 381 IPR003591 -
Lja2g2807 962 SMART LRR_typ_2 405 429 IPR003591 -
Lja2g2807 962 SMART LRR_typ_2 333 356 IPR003591 -
Lja2g2807 962 SMART LRR_typ_2 150 173 IPR003591 -
Lja2g2807 962 SMART LRR_typ_2 454 478 IPR003591 -
Lja2g2807 962 SMART LRR_typ_2 174 198 IPR003591 -
Lja2g2807 962 SMART LRR_typ_2 502 525 IPR003591 -
Lja2g2807 962 PANTHER OS04G0122200 PROTEIN 18 251 - -
Lja2g2807 962 SUPERFAMILY L domain-like 316 565 - -
Lja2g2807 962 Pfam Leucine rich repeat 480 539 IPR001611 GO:0005515
Lja2g2807 962 Pfam Leucine rich repeat 359 418 IPR001611 GO:0005515
Lja2g2807 962 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Lja2g2807 962 PANTHER OS04G0122200 PROTEIN 253 955 - -
Lja2g2807 962 Gene3D Transferase(Phosphotransferase) domain 1 727 956 - -
Lja2g2807 962 ProSiteProfiles Protein kinase domain profile. 645 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2807 962 SUPERFAMILY Protein kinase-like (PK-like) 619 946 IPR011009 -
Lja2g2807 962 PANTHER LRR RECEPTOR-LIKE KINASE 18 251 - -
Lja2g2807 962 SUPERFAMILY L domain-like 31 347 - -
Lja2g2807 962 PRINTS Leucine-rich repeat signature 408 421 - -
Lja2g2807 962 PRINTS Leucine-rich repeat signature 502 515 - -
Lja2g2807 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
Lja2g2807 962 ProSitePatterns Protein kinases ATP-binding region signature. 651 674 IPR017441 GO:0005524
Lja2g2807 962 PANTHER LRR RECEPTOR-LIKE KINASE 253 955 - -
Lja2g2807 962 CDD STKc_IRAK 651 948 - -
Lja2g2807 962 Gene3D Phosphorylase Kinase; domain 1 626 726 - -
Lja2g2807 962 Gene3D Ribonuclease Inhibitor 251 576 IPR032675 -
Lja2g2807 962 Gene3D Ribonuclease Inhibitor 32 144 IPR032675 -
Lja2g2807 962 Gene3D Ribonuclease Inhibitor 147 250 IPR032675 -
Lja2g2807 962 SMART serkin_6 645 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2807 962 Pfam Protein kinase domain 648 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2807 Lja-Chr2 43674924 43679403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2807 28 949 Receptor kinase-like Gene Family AT3G47570 42.540 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja2g2807 Pkinase 2.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2807 - - gmx:100792724 1226.46