Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2787 ATGTCCTTGTTAACCGTGGCACTGGCGCATCAAAAGGGTTCAAGTGAGTTGCTCAGCTTCACGGCACAGCATGGCGGCGGTGGTGATGGTGAAGGTAGAACCTCTGGCGGCTCCGTTGAATCTCAGTCGCTAGGATTGAATCAAGCGGTGGTGAGGCGGCAAGGTGAGGCAACAATGCAAGGTTCAATGGTTTCAGGGTACAACAGAACAAGAGAACAGACAGAAATGATTTCAGCTCTGACACAAGTGGCTTCAGGGTCTGGTAATGAGTTGTTCCAGGGAAGTGGTTTTCCTATGATGTCAGGTTTTGGACAAGTGTCTTCTTCTGGTTTGTCCTCTGGTTCTGTTTCTGGTTCTTGGGTTGGCAACAAAAGAGGGCGTGAAGAAGAAGAAGAAAGCAGTGTTTCTCATCAGTATATGCAGCAACAAACCATTCCTAGACTCTTCAGAACTACTGTTGGTAACTTCATGGTACCTTCTCCAGTTGAATCATCTTCAGTGACAGAAGAATCTCCTTCTACCACTACCGCCGTATCCGCTGCTGCGCCATCGTACGAAGACACCGGAGAGAGGAGAAGAAAGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAAATCCGCGATCCACACAAAGCAGCAAGAGTCTGGCTCGGCACATTCGACACAGCAGAAGCTGCAGCAAGAGCCTATGATGAAGCTGCATTGCGGTTCAGGGGAAACAGAGCAAAACTCAACTTCCCAGAAAATGTTAGAGCAGTACCACCCCGACCACCGCCGCCACAACAACAATTTCAAGCTTTTCCGGCCACCCGGCTCGCCATTCCTGACCCTCTACCACCACCGCAGCTGCAGAATCCGCCGCCATTTCAGGGACAGCCTGAATTGATGAGAGACTATTTGGAATATTCTCAGCTTCTGCAGAATTATGGTGAATTTCAACTTCAGCAACAGCAACAGCAACAAGAATCTTCTAGTTTGCTTCAACAGCTATACTATGACACACAATTGGTTACACTTCAATCACCATCTTTTTCTTCTTCTGTATCATCATCATCAACAACAACAACAACACAGTTTTCACCATCTACTCAGCTTTCCCCTGCTTCATTTCCCCTGTTTTCTAGTCAACAACTGGGAATTTCCCGGCCGCCGGGAAACCTCCCTGGTGGCGGAAGAGGCGGCAGCAGCAGCGGTGGAAGACAGTTTACTCCGTCAACGTGGTCAGATACCAGTGGCCATCGACCACCTTATGGTTGA 1269 0.4925 MSLLTVALAHQKGSSELLSFTAQHGGGGDGEGRTSGGSVESQSLGLNQAVVRRQGEATMQGSMVSGYNRTREQTEMISALTQVASGSGNELFQGSGFPMMSGFGQVSSSGLSSGSVSGSWVGNKRGREEEEESSVSHQYMQQQTIPRLFRTTVGNFMVPSPVESSSVTEESPSTTTAVSAAAPSYEDTGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRAVPPRPPPPQQQFQAFPATRLAIPDPLPPPQLQNPPPFQGQPELMRDYLEYSQLLQNYGEFQLQQQQQQQESSSLLQQLYYDTQLVTLQSPSFSSSVSSSSTTTTTQFSPSTQLSPASFPLFSSQQLGISRPPGNLPGGGRGGSSSGGRQFTPSTWSDTSGHRPPYG* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2787 422 MobiDBLite consensus disorder prediction 19 42 - -
Lja2g2787 422 Pfam AP2 domain 194 243 IPR001471 GO:0003700|GO:0006355
Lja2g2787 422 PRINTS Ethylene responsive element binding protein signature 195 206 IPR001471 GO:0003700|GO:0006355
Lja2g2787 422 PRINTS Ethylene responsive element binding protein signature 217 233 IPR001471 GO:0003700|GO:0006355
Lja2g2787 422 MobiDBLite consensus disorder prediction 277 297 - -
Lja2g2787 422 MobiDBLite consensus disorder prediction 161 193 - -
Lja2g2787 422 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 67 380 - -
Lja2g2787 422 SUPERFAMILY DNA-binding domain 194 252 IPR016177 GO:0003677
Lja2g2787 422 Gene3D AP2/ERF domain 193 253 IPR036955 GO:0003700|GO:0006355
Lja2g2787 422 ProSiteProfiles AP2/ERF domain profile. 194 251 IPR001471 GO:0003700|GO:0006355
Lja2g2787 422 MobiDBLite consensus disorder prediction 347 386 - -
Lja2g2787 422 CDD AP2 194 253 IPR001471 GO:0003700|GO:0006355
Lja2g2787 422 MobiDBLite consensus disorder prediction 114 142 - -
Lja2g2787 422 MobiDBLite consensus disorder prediction 400 416 - -
Lja2g2787 422 MobiDBLite consensus disorder prediction 347 422 - -
Lja2g2787 422 MobiDBLite consensus disorder prediction 277 292 - -
Lja2g2787 422 PANTHER DNA-BINDING DOMAIN 67 380 IPR044808 GO:0003700|GO:0009873
Lja2g2787 422 MobiDBLite consensus disorder prediction 161 182 - -
Lja2g2787 422 SMART rav1_2 194 257 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2787 Lja-Chr2 42633563 42635788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2787 152 254 AP2-EREBP Transcription Factor Family AT5G61890 60.748 2.15e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja2g2787 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2787 - - mtr:MTR_6g037610 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2787 2 42633563 42635788 Lja2g2787 2 42633563 42635788 ECH
Lja1g1677 1 18513130 18515367 Lja2g2787 2 42633563 42635788 PCT
Lja2g2787 2 42633563 42635788 Lja5g0736 5 6771171 6773656 PCT