Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2766 ATGAATCTAAGCATAGAAAAATTCGACCAGACGAAACATTTCAAAATCAGAAGTCTCAAAATAAATAGTCTCAAAATGTGGACAAAAAAACATTTAGTGTTCAAGAGAAAGTATTATCTTGAGTTTTTGAAGTTCTGTTTTGAAAACTTTGTAGTGGCTATTTGGTCCTCCAAAAAAAGAGCCAATTGTAAGAAGTTGGTTGATATTTTATTTGGAGATATGAAAGAGAAGTTACTTTTCATTTGGGATGGTTCTCACTGTACAACAACAACATTTGATCTACCTACTCAACACAATAAAAAAATTGTGTTTAAGGATTTGAATAAAGTTTGGGATGAGTATGCAAATTTGATGTTGAAAACACTTTGCTGGTTGACGATTCTCCATATAAGGCATTGCTTAATTCTCCACACAACATTCTTCCTTCATACATGTAAGTCTTGGAAGAGAGATGACAATTCATTAGGGGAGGGTGGACAGCTAATGATGTTTTTGGATGAATTGGTGAATGTTGTGGATGTAAGGGAGTATGTTAAGACTATCTCATTTGGCCAACCAAATATCAATGAGCAAGATAAATATTGGGGGTGCTATAAGAATGTTGTTTATGAGGTTATGAATAAGACAGGAGCGGAGGAATCCTCTGAGTCCAAGTCAGCTGCTGAAGTTTCCAATGGTGAAGACCCACAACAACAACAACTGGGTTTTGAGCCTTCTACCCTTGCTCATAGTCAGTGGTCAGATCTCAATCACGCAACGGAGGACACACTTGATGATGGATCCAAAAATGTGAATGAAGAGAAAAGGAGTGGTAGAACTCCTCACTACCCTTTGACAGATTGTGAATATTATGTGAAGAATGGGCGGTGCAAGTTTGGATCCAGTTGTTTGTTTAAGCACCCCATTAAGGAGAATCCAGGAGAACCAACAGAAATATGTAAGAATTATCAAAGGTTTGGGGTTTGCAAGTATAGAAAAGCTTGTAGGTATATCCACACAAGAGGAAAGAGTTCTGAGAGGAGCTTGAACAACATGTCAGTTGAAGAAAATTATTCTTGA 1059 0.3702 MNLSIEKFDQTKHFKIRSLKINSLKMWTKKHLVFKRKYYLEFLKFCFENFVVAIWSSKKRANCKKLVDILFGDMKEKLLFIWDGSHCTTTTFDLPTQHNKKIVFKDLNKVWDEYANLMLKTLCWLTILHIRHCLILHTTFFLHTCKSWKRDDNSLGEGGQLMMFLDELVNVVDVREYVKTISFGQPNINEQDKYWGCYKNVVYEVMNKTGAEESSESKSAAEVSNGEDPQQQQLGFEPSTLAHSQWSDLNHATEDTLDDGSKNVNEEKRSGRTPHYPLTDCEYYVKNGRCKFGSSCLFKHPIKENPGEPTEICKNYQRFGVCKYRKACRYIHTRGKSSERSLNNMSVEENYS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2766 352 MobiDBLite consensus disorder prediction 252 272 - -
Lja2g2766 352 SUPERFAMILY CCCH zinc finger 310 334 IPR036855 GO:0046872
Lja2g2766 352 Pfam NLI interacting factor-like phosphatase 24 119 IPR004274 -
Lja2g2766 352 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 30 116 - -
Lja2g2766 352 ProSiteProfiles Zinc finger C3H1-type profile. 276 303 IPR000571 GO:0046872
Lja2g2766 352 MobiDBLite consensus disorder prediction 213 233 - -
Lja2g2766 352 Gene3D - 271 347 - -
Lja2g2766 352 SUPERFAMILY HAD-like 26 178 IPR036412 -
Lja2g2766 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 301 IPR000571 GO:0046872
Lja2g2766 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 310 332 IPR000571 GO:0046872
Lja2g2766 352 SUPERFAMILY CCCH zinc finger 275 304 IPR036855 GO:0046872
Lja2g2766 352 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 30 116 - -
Lja2g2766 352 SMART c3hfinal6 307 334 IPR000571 GO:0046872
Lja2g2766 352 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Lja2g2766 352 ProSiteProfiles Zinc finger C3H1-type profile. 307 335 IPR000571 GO:0046872
Lja2g2766 352 Gene3D - 10 183 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2766 Lja-Chr2 42149120 42151518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2766 280 347 C2H2 Transcription Factor Family AT5G18550 30.952 2.59e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja2g2766 NIF 2.8e-09 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2766 - - lja:Lj0g3v0261659.1 591.267