Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2760 ATGTCCTTCCGGGGTATTGTTCGTGATGTAAGGGACGGATTTGGAAGCTTATCTAGGCGGAGTTTTGAGGTAAGGCTTCCCGGCCATCACAGGGGCAAGTCAAATAGTTCGGTCTATGAGTTGAAAGAACAGCCACCAATAATACAGAACAGCAGGTGGGCTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAATAGATTGGAAGCAAGTGAGAGCACATGGCCAGCTCGTAAGCACGTGGTTGCCTGTGCTGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTAAGTGGGAAGATTACTTTCCCTGTTTCACTAAAGCAGCCTGGTGCTAGGGACGGACACATCCAGTGTTTCATCAAGAGAGACAAATCTAATATGACTTATCACCTATTCCTTTGTCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGAGCAGAAGAACGACATGCACTGAGTACATTATATCCATAGATGCGGATAATATATCAAGATCTAGTAGCACATACATTGGAAAACTAAGGTCAAATTTTCTTGGCACCAAATTCATAATTTATGATACACAGCCTCCCTACAACAATGCTCAGCTGTCTCCTCCAGGCCGAAGCCGTAGATTTAATTCAAAGAAGGTTTCCCCCAAAGTGCCTAGTGGCAGCTACAATATTGCCCAGATCACGTATGAGTTGAATGTCTTGGGTACTAGGGGCCCACGTAGGATGAACTGCACCATGCACTCAATCCCTATGTCAGCCCTTGAGCCTGGTGGCGCGGTCCCAGGGCAGCCAGAACTCCTTCCCCGCTCCCTTGAGGATTCATTCCGCAGCATATCCTTCGCAAGATCAATTGACAACGCGAGCGAGTTTAGCAGCTCTAGGTTCTCAGACATAATTGGGACCAGCAATGAAGAGGAGGGAAAAGACAGACCACTGGTTCTCAAGAACAAATCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGTCTCAACTTCAGGGGTAGGGTGACTGTCGCCTCTGTCAAGAATTTTCAGCTGATTGCCGCGACACAGCCGGCCGCCGGTGCTCCTACACCATCTCAACCAACACTGTCTGATCATGATAAGACTATTCTTCAGTTTGGCAAAGTCGGCAAGGACATGTTTACCATGGACTATAGATATCCCCTCTCTGCATTTCAGGCTTTCGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCATGTGAATAA 1272 0.4709 MSFRGIVRDVRDGFGSLSRRSFEVRLPGHHRGKSNSSVYELKEQPPIIQNSRWASLPPELLRDVINRLEASESTWPARKHVVACAAVCKSWREMCKEIVSSPELSGKITFPVSLKQPGARDGHIQCFIKRDKSNMTYHLFLCLSPALLVENGKFLLSAKRSRRTTCTEYIISIDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPMSALEPGGAVPGQPELLPRSLEDSFRSISFARSIDNASEFSSSRFSDIIGTSNEEEGKDRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPTLSDHDKTILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2760 423 ProSitePatterns Tub family signature 2. 408 423 IPR018066 -
Lja2g2760 423 Gene3D Tubby Protein; Chain A 110 423 IPR025659 -
Lja2g2760 423 PANTHER TUBBY-RELATED 1 423 - -
Lja2g2760 423 SUPERFAMILY F-box domain 45 96 IPR036047 GO:0005515
Lja2g2760 423 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Lja2g2760 423 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 423 - -
Lja2g2760 423 Pfam F-box domain 53 100 IPR001810 GO:0005515
Lja2g2760 423 Pfam Tub family 114 418 IPR000007 -
Lja2g2760 423 SUPERFAMILY Tubby C-terminal domain-like 102 423 IPR025659 -
Lja2g2760 423 Gene3D - 48 104 - -
Lja2g2760 423 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Lja2g2760 423 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lja2g2760 423 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Lja2g2760 423 PRINTS Tubby superfamily signature 401 423 IPR000007 -
Lja2g2760 423 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Lja2g2760 423 PRINTS Tubby superfamily signature 380 399 IPR000007 -
Lja2g2760 423 PRINTS Tubby superfamily signature 169 185 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2760 Lja-Chr2 41969046 41973442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2760 1 423 TUB Transcription Factor Family AT1G76900 68.192 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lja2g2760 Tub 6.8e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2760 K19600 - rcu:8283226 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2760 2 41969046 41973442 Lja2g2760 2 41969046 41973442 ECH
Lja2g2760 2 41969046 41973442 Lja5g0721 5 6612493 6614805 PCT