Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2749 ATGGAAGGGAAGATGTCACAGGGAGGTGTAGCTCAAGGTGGGGCTTCTTTTGGTGGTTTTGATTTGCCTGGAGCAATGCCGATTCATCGTCACACACAGCACTCGCATACCATGAACCAACATCAAACTCATGCTTGCCAAGGGTCTTCAGTGCGTCCCTCAAATCATGATGGTTTTCCTCTTACCATGGGAACCCTGCAGAACTGTGATCAGCCTATGTCAATGCCAGAGTTTAATCAGGGAGATAGAAACAAAAACTCAGCAAGTGAGGAAGATGAGCCGAGCTATGCTGAGGAAGGTGTCGATGGTCATCATCATGAAGCGAGTAGAGGGAAAAAGGGGTCGCCTTGGCAGCGGGTGAAGTGGACTGATAAGATGGTGAGGCTTCTGATAACAGCTGTGTCTTATATAGGCGACGATTCAACTTCTGATGTTGGCAGCGGAGGACGAAGAAAATTTCCAGTCCTGCAGAAAAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGAGGTTATCATGTTTCCCCTCAGCAGTGTGAGGATAAATTTAATGATCTTAATAAAAGGTATAAAAGGCTTAATGATATGCTTGGGAGAGGCACGTCGTGTCAGGTTGTTGAAAATCCTGCTCTGTTGGATTTAATAGATTATCTTTCTGAGAAAGAAAAGGATGATGTTCGGAAAATATTAAGCTCAAAGCAGCTCTTTTATGAAGAGATGTGTTCTTACCACAATGGTAATAGATTGCATTTACCCCATGATCTTGCATTGCAACGATCGCTACAGTTAGCTCTCCGAAATAGAGATGACTTCGAAAATGATGATATCAGAAGGTCCTATGATGATGATCATGATGAAGATGACCAAGATATCGGAACCGATGATCATGACGACCTTGAAGAGAATTATGCTTCTCATGGAGAGAGTAGAGGAATCTTTGGGGGATTGGGGACATCTACAAAAAGACTTAAACAAGGAGAAAGCCAAGAAGGTGCTGCTACTTTTGGGAATTCTTTAAAGAGTCATGGACCGATGGTCCAATCTGATGCCAATCAAGCTTTACCTGAAAGCATGAGAGCGGCTTGGTTACAGAAGCAATGGATTGAATCTCGGTCACTTCAGTTAGAAGAACAGAAGCTACAGATTCAGGCTGAGATGCTAGAACTAGAGAAACAAAGATTGAAGTGGCAGAGGTTTAGTAAGAAAAAAGACCGGGAGTTGGAGAAGATGAAGCTGGAGAATGAAAGAATGAAGCTAGAAAATGAACGTATCGCTTTAGAACTAAAGCGTAAGGAAATTGGCACTGGCTTTAACTAG 1323 0.4301 MEGKMSQGGVAQGGASFGGFDLPGAMPIHRHTQHSHTMNQHQTHACQGSSVRPSNHDGFPLTMGTLQNCDQPMSMPEFNQGDRNKNSASEEDEPSYAEEGVDGHHHEASRGKKGSPWQRVKWTDKMVRLLITAVSYIGDDSTSDVGSGGRRKFPVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKRLNDMLGRGTSCQVVENPALLDLIDYLSEKEKDDVRKILSSKQLFYEEMCSYHNGNRLHLPHDLALQRSLQLALRNRDDFENDDIRRSYDDDHDEDDQDIGTDDHDDLEENYASHGESRGIFGGLGTSTKRLKQGESQEGAATFGNSLKSHGPMVQSDANQALPESMRAAWLQKQWIESRSLQLEEQKLQIQAEMLELEKQRLKWQRFSKKKDRELEKMKLENERMKLENERIALELKRKEIGTGFN* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2749 440 Coils Coil 372 399 - -
Lja2g2749 440 MobiDBLite consensus disorder prediction 84 116 - -
Lja2g2749 440 PANTHER F16F4.11 PROTEIN-RELATED 1 440 - -
Lja2g2749 440 MobiDBLite consensus disorder prediction 1 116 - -
Lja2g2749 440 Gene3D - 122 194 - -
Lja2g2749 440 Coils Coil 402 434 - -
Lja2g2749 440 Pfam Myb/SANT-like DNA-binding domain 119 245 IPR044822 -
Lja2g2749 440 MobiDBLite consensus disorder prediction 276 346 - -
Lja2g2749 440 MobiDBLite consensus disorder prediction 38 83 - -
Lja2g2749 440 MobiDBLite consensus disorder prediction 323 346 - -
Lja2g2749 440 PANTHER FACTOR, PUTATIVE-RELATED 1 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2749 Lja-Chr2 41540109 41542392 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja2g2749 Myb_DNA-bind_4 2.8e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2749 - - mtr:MTR_6g035315 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2749 2 41540109 41542392 Lja2g2749 2 41540109 41542392 ECH
Lja2g2749 2 41540109 41542392 Lja5g0717 5 6546890 6550942 PCT