Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2748 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGCAGGAGGAGGAGGAAGCTCTGGAGATGCAGCAGTGGCAGCAGCTGCTGCTGCAGCAAGAGCTCATGACGGCGGTGATACGGCGGCGGGTGGTGGTGGAGGCGGATCAAATTCAGGGGATGATGAAAGGGGTGACCGGAGCTTTGGCGGTAACCGGTGGCCTAGACAAGAGACTCTGGCTTTGTTGAAGATACGGTCAGATATGGACGTTGCTTTTAGAGATGCCAGTGTTAAGGGTCCCTTGTGGGATGAAGTTTCAAGGAAATTGGCAGATCTTGGGTATCACAGAAATGCCAAGAAGTGCAAAGAGAAATTTGAGAATGTTTACAAGTACCACAAGAGAACCAAGGAAGGAAGAAGTGGGAAATCAGATGGGAAAACCTATCGTTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTTCAATTCAATCCCCAACAGCTCCAAAACCGCCACAACAGCAAACTGCATCACTGCCTGCAATTCTATCCCCAACTCCTTCAAAACTGCCAAAACAAACACCACCACCAGCAACAACACCTGCATTATCATCATTGTCACTTCCAACCACAACAGTGCCATTGCCATTGCCACCAACATTGGTTAACACAATCCCGAGCACCACCTCCATTACTGTTCCATCAATAGCCCCTTCTTACCCACCATCAAACCCTTCATTTTTCCCATCAACAACAAACCCTCCTCACACCATCACTCCACCTTCCTTCCCCAACATACCGACGGATCTCTTGTCCGATTACAGCACTTCGTCGACATCCTCGGACGAAACAATGATGGAAGCCGGAGGAACACGGAAGCGGAAGAGGAAATGGAAGGACTTCTTTGAGAGGCTAATGAAGGAAGTGATGGAGAAGCAGGAGCAGCTGCAGAAGAGGTTCCTGGAGGCCATTGAGAAACGCGAGCAAGAGCGAACGGCTAGAGAAGAAGCGTGGAAGATGCAGGAGATGCAAAAGATCAACAGGGAGAGAGAAATTCTCGCCCAAGAGAGATCAATTGCCGCAGCAAAAGATGCAGCCGTCATGACATTTCTGCAGAAGATTTCTGAACAACAAAATCTCACTCCTACATCCAACAACAACAACAACAATGCACAACAACCACAAGACCCCGCTCCAGCACCATCACCAGCACCAGTACCGGTACCTGTACCAGTATCGGTACCGGCACCAGTGCAAACACCAATCCTGGTGGCGCAACAAATTACAGCTGCTCCGGTTCCGCAAGCGCCACAACCATTGGCCCCACAAGAGGTCCCACCACAACATCAGCATCATCAGGTGCAGCAACAAGTGACCAATTTGGAAATGATAAAAGGTGATAATGGAGAGAGTGTGGGTGTGATGCCAGCTAGCTCTTCAAGGTGGCCAAAAGCTGAGGTTGAGGCACTGATAAAGCTAAGAACGAGTTTGGATACAAAGTACCAAGACAGTGGTCCTAAAGGACCACTATGGGAGGAGATATCAGCGTTGATGAGGAAAATGGGGTACAACCGGAATGCCAAAAGATGCAAGGAGAAATGGGAGAATATCAACAAGTACTTTAAGAAAGTGAAGGAGAGCAACAAGAAGAGGCCAGAAGATGCAAAGACTTGTCCTTATTTTCACCAATTGGATTCTCTATACAGGGAGAAGAGCAAGATGATGGAGAGCAGCTTGATGAAGCCTGAGAGTGCTGCGGCGGCCACAGCAATGATGGCACCATTGATGGTGCGGCCGGAGCAGCAGTGGCCGCCCCAACCGGTACCAGATGTCACCATGGTAGATGCTGGGAGTGATCGTCGGCACAGTGAGGAGGAGGACTATGATGATGATAATGATTATGATGACAAGGATATTGGCGATGAAGATGAAGATGATGAAGGAACTGGTAAGTACGAGATTGTGGCGAGTAAGCCGGCACCGAGGTGA 1959 0.4921 MLGDSAVLGTAGGGGSSGDAAVAAAAAAARAHDGGDTAAGGGGGGSNSGDDERGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSDGKTYRFFDQLQALENNPSIQSPTAPKPPQQQTASLPAILSPTPSKLPKQTPPPATTPALSSLSLPTTTVPLPLPPTLVNTIPSTTSITVPSIAPSYPPSNPSFFPSTTNPPHTITPPSFPNIPTDLLSDYSTSSTSSDETMMEAGGTRKRKRKWKDFFERLMKEVMEKQEQLQKRFLEAIEKREQERTAREEAWKMQEMQKINREREILAQERSIAAAKDAAVMTFLQKISEQQNLTPTSNNNNNNAQQPQDPAPAPSPAPVPVPVPVSVPAPVQTPILVAQQITAAPVPQAPQPLAPQEVPPQHQHHQVQQQVTNLEMIKGDNGESVGVMPASSSRWPKAEVEALIKLRTSLDTKYQDSGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHQLDSLYREKSKMMESSLMKPESAAAATAMMAPLMVRPEQQWPPQPVPDVTMVDAGSDRRHSEEEDYDDDNDYDDKDIGDEDEDDEGTGKYEIVASKPAPR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2748 652 CDD GT1 470 535 - -
Lja2g2748 652 Pfam Myb/SANT-like DNA-binding domain 61 147 IPR044822 -
Lja2g2748 652 Pfam Myb/SANT-like DNA-binding domain 470 557 IPR044822 -
Lja2g2748 652 MobiDBLite consensus disorder prediction 1 62 - -
Lja2g2748 652 MobiDBLite consensus disorder prediction 590 652 - -
Lja2g2748 652 ProSiteProfiles Myb-like domain profile. 470 528 IPR001005 -
Lja2g2748 652 Coils Coil 289 320 - -
Lja2g2748 652 CDD GT1 61 126 - -
Lja2g2748 652 MobiDBLite consensus disorder prediction 369 385 - -
Lja2g2748 652 Gene3D - 63 124 - -
Lja2g2748 652 Gene3D - 472 533 - -
Lja2g2748 652 MobiDBLite consensus disorder prediction 150 173 - -
Lja2g2748 652 SMART sant 59 121 IPR001005 -
Lja2g2748 652 SMART sant 468 530 IPR001005 -
Lja2g2748 652 MobiDBLite consensus disorder prediction 369 398 - -
Lja2g2748 652 MobiDBLite consensus disorder prediction 150 198 - -
Lja2g2748 652 ProSiteProfiles Myb-like domain profile. 61 119 IPR001005 -
Lja2g2748 652 MobiDBLite consensus disorder prediction 425 444 - -
Lja2g2748 652 MobiDBLite consensus disorder prediction 618 639 - -
Lja2g2748 652 PANTHER - 1 646 - -
Lja2g2748 652 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2748 Lja-Chr2 41488953 41492394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2748 448 593 Trihelix Transcription Factor Family AT1G76880 64.151 6.65e-60 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja2g2748 Myb_DNA-bind_4 8.9e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2748 - - gmx:100804788 634.024