Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2724 ATGGCAGATCTTGCTAGATACGGGAATGCCAACCGTGACATTCAACAAGCACTAATTGCCTTGAAAAAGGGTGCTCAACTGCTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGCCCATTTAGACTTTCCAATGATGGATCAACTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAATCTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCAAACGTTACTTGCGTCCTGAAAAGGAGTATTTGTCCTTTTCACTTATTTATGATAGCGGAAAGCTATCCCTTGACCTGATTTGCAAAGATAAAGTTGAGGCAGAAGCGTGGATTTCTGGTCTCAAATCACTGATCTCTTCTGGCCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGATGAGGGCCTCAATCTTGATGATAGCAGAGATTTAACATCAAATAGTCCAAGCGACAGTTCAGCTAGTGCGTCACGAGACATTAGTTCTCCTGACGTTCCTGCGAGTCTTCCAAATACCTCACCAAAGTCCTTTTGGCCTGACAATATTGTAAATTCTGAAAGGTCACATGCACCATCAGACTCAACAAATATGCAAGTAAAAGGATCTGGTCCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCCAGCACGTCTAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTATATATATGGGGGGATATTATCTGTGAAAACGTGCAAGTTAGTGCCGATAAAAGTGTCAGTTATTTCAGTCCAAGGGCAGATGCGCTTATCCCCAAACCCCTAGAGTCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGAGTTAGACATGCTTCTTTAGTCACTAGGCAAGGTGAGGTTTTTACGTGGGGTGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAAAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGACTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATTCCTGTGCTGTTACAGTGGCCGGTGAACTATATACATGGGGTGATGGTACTCATCATGCTGGGCTGCTTGGTCATGGAACTGATGTTAGTCATTGGATACCAAAGAGAATTGCCGGTCCATTAGAGGGACTTCAAATTGCATCTGTTGCCTGTGGTCCGTGGCACACTGCCTTGATAACTTTAAGTGGGCAGCTCTTTACATTTGGTGATGGAACTTTTGGTGTCTTGGGTCATGGTGATAGGGGAAACATTTCATGTCCTAGAGAAGTGGAATCCTTATCAGGGCTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCACACTGCAGCCGTGGTAGAGGTTATTGCAACGCAAACTAGTGCGAGTTTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGGCATGGGGATAAGGAGGCACGACTTAAACCAACTTGTGTGCCTGCACTTATTGAGTACAATTTTCATAAAATTGCTTGTGGACACAGTTTGACAGTAGGCCTGACAATATCTGGACGTGTTTTTACCATGGGAAGTACTGTATATGGTCAGCTTGGGAATCCCAAGTCTGATGGAAAGCTGCCCTGCTTGGTTGGAGACAAGATTGCTGGGGAGTCCGCTGAAGAAATCGCATGTGGTGCATATCACGTGGCTGTTTTAACATCCAAAAATGAAGTTTACACTTGGGGTAAGGGTGCAAATGGGAGATTGGGTCATGGAGATCTTGAAGATCGAAAAACACCAACTCTGGTTGAAGCATTGAAGGACCGACATGTGAAATATATTGCATGTGGTTCAAACTACTCGGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAATGCTCTGCCTGTAGACAGGCATTTGGCTTCACTAGAAAGAGGCACAATTGTTACAACTGTGGACTTGTGCACTGCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCAGCACTAGCTCCTAATCCTGGCAAGCCATATCGTGTTTGTGAATCTTGTTATGTAAAATTGAACAAGGTTGCAGAAACTAACCATAATAATCGGAGGAGTGCTTTGCCACGTCTGTCGGGTGAAAACAAGGATAGGTTAGACAAGTCTGAGCTAAGATTGTCCAAGTCAGTAATTCCTTCTAACATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGAAAGAAGGCTGATACATTCTCACTAGTTCGCTCCTCGCAAGGACCTTCCTTGCTACAGCTGAAAGATGTTGTATTCTCGACTGCTGTTGATCTGAAACGAACTGTTCCAAGACCGGTGGTTGCACCATCTGGAGTAAGTTCAAGGTCTGTGTCCCCTTTCTCTCAGAGACCAAGCCCTCCTCGTTCTGCTACACCTATTCCAACAACATCAGGGCTTTCCTTCTCCAAAAATATTGCTGATAGGTTAAAGAAAACAAATGAAATTTTAAATCAGGAAGTGCAGATGTTACGTGCTCAGGTTGAGAGCCTGAGGAAGAGATCTGAACTACAAGAGTTAGAGCTTCAAAGGTCAACAAAAAAGACACAAGAAGCTTTGGCACTGGCTTCTGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACGGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCTGGAGTTTATGATGCTGAGAACATTAGACCACCTTACCAGCCAAATGGCATCCACTATCCAGACTCAAATGGGGAGCAGCACTCCAAGGCAGAATTAATCAGCAGCCCTAGTTCGGCTTCCATAGGACTTGGATCCTCGCTGTCGAATGGAAATTTGGGGAATTTTGCAGGAGCCAATGGAACCAATAGTCACGAGCAAATCCGTACCCTCGTGACCTCTAATGGGACCAATAATTATCCAGGTGTGAAATTTCCAAATGGTGGTGCTGATTTTCAGGCAAGCAGCAATATCATATCAGGCACTGTTGATGGAAGGGATTCTGGGAATTTCCAAGATGATGAGAGTGGTCTGAAATCAAAGAATGCTGTGCTGGCTGCTAATAGTAATCATATTGAGGCAGAGTGGATTGAACAGTATGAACCTGGTGTCTATATAACCCTTGTGGCCCTGCGTGATGGAACTAGAGATCTGAAGCGAGTACGATTCAGCCGGAGGAAATTCGGAGAGAACCAAGCAGAGATTTGGTGGTCAGAGAACCGGGAGAAGGTATATGAAAAATACAATGTTCGTAGTGGGGACAAGTCTTCCAGCCAAGCAGCACTTAGGGAAGAGGGCGCTGGTTCTCCTGTTTCCCGAAAAGCTTAG 3351 0.4458 MADLARYGNANRDIQQALIALKKGAQLLKYGRKGKPKFCPFRLSNDGSTLIWISSSGERNLKLSSVSRIIPGQRTAVFKRYLRPEKEYLSFSLIYDSGKLSLDLICKDKVEAEAWISGLKSLISSGQGGRSKIDGWSDEGLNLDDSRDLTSNSPSDSSASASRDISSPDVPASLPNTSPKSFWPDNIVNSERSHAPSDSTNMQVKGSGPDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGDIICENVQVSADKSVSYFSPRADALIPKPLESNVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALTSTTVDFVACGEFHSCAVTVAGELYTWGDGTHHAGLLGHGTDVSHWIPKRIAGPLEGLQIASVACGPWHTALITLSGQLFTFGDGTFGVLGHGDRGNISCPREVESLSGLRTIAVACGVWHTAAVVEVIATQTSASLSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIEYNFHKIACGHSLTVGLTISGRVFTMGSTVYGQLGNPKSDGKLPCLVGDKIAGESAEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDLEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCESCYVKLNKVAETNHNNRRSALPRLSGENKDRLDKSELRLSKSVIPSNMDLIKQLDSKAAKQGKKADTFSLVRSSQGPSLLQLKDVVFSTAVDLKRTVPRPVVAPSGVSSRSVSPFSQRPSPPRSATPIPTTSGLSFSKNIADRLKKTNEILNQEVQMLRAQVESLRKRSELQELELQRSTKKTQEALALASEESAKSKAAKEVIKSLTAQLKDLAERLPPGVYDAENIRPPYQPNGIHYPDSNGEQHSKAELISSPSSASIGLGSSLSNGNLGNFAGANGTNSHEQIRTLVTSNGTNNYPGVKFPNGGADFQASSNIISGTVDGRDSGNFQDDESGLKSKNAVLAANSNHIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRKFGENQAEIWWSENREKVYEKYNVRSGDKSSSQAALREEGAGSPVSRKA* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2724 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
Lja2g2724 1116 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1096 - -
Lja2g2724 1116 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Lja2g2724 1116 MobiDBLite consensus disorder prediction 904 935 - -
Lja2g2724 1116 SMART fyve_4 621 690 IPR000306 GO:0046872
Lja2g2724 1116 Pfam FYVE zinc finger 623 689 IPR000306 GO:0046872
Lja2g2724 1116 SUPERFAMILY PH domain-like 13 123 - -
Lja2g2724 1116 MobiDBLite consensus disorder prediction 783 816 - -
Lja2g2724 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 519 570 IPR000408 -
Lja2g2724 1116 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 627 689 IPR017455 -
Lja2g2724 1116 CDD PH_PLC_plant-like 12 124 - -
Lja2g2724 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 466 513 IPR000408 -
Lja2g2724 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Lja2g2724 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 349 400 IPR000408 -
Lja2g2724 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 572 619 IPR000408 -
Lja2g2724 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 403 452 IPR000408 -
Lja2g2724 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 518 567 IPR000408 -
Lja2g2724 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Lja2g2724 1116 MobiDBLite consensus disorder prediction 1091 1116 - -
Lja2g2724 1116 Gene3D - 189 359 IPR009091 -
Lja2g2724 1116 Gene3D - 360 455 IPR009091 -
Lja2g2724 1116 MobiDBLite consensus disorder prediction 921 935 - -
Lja2g2724 1116 Coils Coil 823 864 - -
Lja2g2724 1116 PRINTS Chromosome condensation regulator RCC1 signature 566 587 IPR000408 -
Lja2g2724 1116 PRINTS Chromosome condensation regulator RCC1 signature 349 365 IPR000408 -
Lja2g2724 1116 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Lja2g2724 1116 PRINTS Chromosome condensation regulator RCC1 signature 508 526 IPR000408 -
Lja2g2724 1116 PRINTS Chromosome condensation regulator RCC1 signature 406 420 IPR000408 -
Lja2g2724 1116 PRINTS Chromosome condensation regulator RCC1 signature 299 315 IPR000408 -
Lja2g2724 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 403 IPR000408 -
Lja2g2724 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Lja2g2724 1116 MobiDBLite consensus disorder prediction 144 229 - -
Lja2g2724 1116 MobiDBLite consensus disorder prediction 214 228 - -
Lja2g2724 1116 Gene3D - 13 129 IPR011993 -
Lja2g2724 1116 Coils Coil 879 899 - -
Lja2g2724 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Lja2g2724 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 696 IPR013083 -
Lja2g2724 1116 MobiDBLite consensus disorder prediction 146 206 - -
Lja2g2724 1116 Pfam Transcription factor BRX N-terminal domain 874 909 IPR027988 -
Lja2g2724 1116 ProSiteProfiles BRX domain profile. 1035 1090 IPR013591 -
Lja2g2724 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Lja2g2724 1116 CDD FYVE_like_SF 632 685 - -
Lja2g2724 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 455 IPR000408 -
Lja2g2724 1116 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1096 - -
Lja2g2724 1116 SUPERFAMILY FYVE/PHD zinc finger 623 695 IPR011011 -
Lja2g2724 1116 Gene3D - 456 633 IPR009091 -
Lja2g2724 1116 Pfam Transcription factor regulating root and shoot growth via Pin3 1034 1089 IPR013591 -
Lja2g2724 1116 SUPERFAMILY RCC1/BLIP-II 235 624 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2724 Lja-Chr2 40750560 40761846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2724 983 1106 Major Intrinsic Protein MIP AT1G31880 32.576 1.89e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2724 - - gmx:100805364 1794.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2724 2 40750560 40761846 Lja5g0697 5 6279185 6286620 PCT