Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2711 ATGGAAGATTTTTGGAGCATGACTTGTGGGGATTCTGGTTGTTCAGAGACAGGAGTAGAGCCTTTCTGTCATGATTTCAGGCTTTTGAAAAATCCTTCCACATGCATCAATCATTTGTTGACCATTTGCTTTGATGTGTTACTGCTGATCATAATGTCACTGGTTATGATCCACAAGTGTTTGTCAGGACCAATTCGGGGTCCAATCCGAGCAGAAAGATTGTCAAAGTTGCAGCTAGTTTCTGCCATAACCAACGGTTCTCTAGGGATGCTGCATTTGTGCATAGGCATTTGGGTTTTAGAGGAGAAGTTAAGGAGAATGCACAGTGCTCTTCCTCTTAATTGGTGGTTGCTAGAATTGTTTCAGGGATTCACATGGGTGTTAATCGGTTTAACTCTAAGTCTACAGCTGAAACAATTTCAAAGAGCATGGTTGTGGATGTTTTCTTTTCTTGTCTTCTTTGTCTCTGGCCTTTTCTGTGCTTTATCCATATCTTATGCATTTAGCAGCAGAGAATTGTCCCTCAAGGCTGCTTTAGATGTTCTATCTTTTCTAGGAGCAGCTTTACTTCTCTTATGCACATACAAAGTATGCAAACGTGAAGAAGAAATTGATGAAAGTCTTTATGCCCCTTTGAATAGCCAGTTCAATGAAGTTCATCCTGTTAGCTATGTCACCCCATTTGCCAAAGCCAGATTTTTTAGTAGGATGTCATTTTGGTGGTTGAATCCACTGATGAAAAGGGGTCAAGAGAGAACACTTCATGATGAGGATATGCCAAAGTTGTGGGAGTCCGAGCGAGCAGAAAGATGCTATTTCTTGTTTGTAGAACAATTGAATAGACAGAAGCAAAAGGACCCATCATCACGTTCATCACTTTTATGGACACTAATTTTGTGCCACCAGAGAGAGATTTTGATATCAGGGTTCTTTGCACTGCTCAAGGTACTCACTTTGTCTTCTTGTCCTGTAATTCTTAATGCCTTTGTATTAGCTTCTGAGGATAATGGAAATTTCAAATATGAAGGTTATGCATTGGCCATATCACTTTTCTTTGTAAAGATCATAGAATCCCTGTCACAAAGGCAATGGTATTTTCGTTGTAAACTTGTCGGTATGAAAGTTAAATCATTACTCACTGCAGCCATCTATAAAAAACAACTGAGGTTATCCAATGCTGCTAGATTGATTCACTCTGGTGGTGAGATAACGAGTTATGTGACTATAGATGCTTACAGAGTTGGAGAATTTCCATTTTGGTTTCACCAAACTTGGACTACGATCCTCCAATTGTGTATTGCACTACTAGTTCTTATTCGTGCTGTTGGACTGGCAACAATTGCCTCATTAGTGGTGATAGTTCTCACTGTGCTTTTCAATGCTCCATTAGCAAAGTTGCAGCACAAGTTTCTGAGCAAACTGCTAGTGGCACGAGATGAAAGATTAAAGGCTAGTTCTGAGGCTCTAGTGAATGTCAAAGTATTGAAGTTCTATGCATGGGAAATCCATTTTAAAGATGCTATTCAGAGCTTAAGAAATGTTGAACTCAAATGGTTATCTTCAGTGCTACTACAAAAAGCATATAATGTCATTATCTATTGGTCTGCGCCTATGTTTGTCTCTGCTGCTACCTTTATGGCATGTTACTTCTTGAAAGTTCCTTTACATGCAAATAATCTTTTCACTTTTGTGGCAACATTACGTCTAGTGCATGATCCGATTTCAACCATACCCGATGTTATTGGAGTTGTTATTCAAGCAAAGATTGCATTTGCCCGGATTGTAAAATTCCTTGAGGAACCTGAGCTGCAGAGGGAAAATGTCCGTAAAGTTTGCTTTGTTGAGCAGCTCAAGGGCACAATTTTAATTAATTCTGCTGACTTTTCATGGGAATGTAATGCATCAAAGCCAACACTAAGAAACATAAATTTAAAGGTTAGTCCTGGGCAAAAGATAGCGATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTCTTAGCAGCAATTCTTGGGGAAATCCCTTATACTAAAGGAAATATTGAAGTTTATGGGAAATTCGCTTATGTTTCTCAAACAGCATGGATACAAAGAGGAACAATACAGGAAAATATTTTGTTTGGATCAGCTTTAGATGTTCAAAGGTACCAAGAAACACTTCATAGATCTTCACTTGTGGAGGACCTTGAGTTGTTTCCCCATGGTGACCTCACTGAAATAGGCGAGAGAGGAGTAAACCTGAGCGGAGGTCAGAAACAGCGAATTCAACTAGCCCGTGCTCTTTATCAGAATGCTGATGTATATATCCTCGATGATCCATTCAGTGCTGTTGATGCACACACTGCCACAAATTTGTTCAATAAATACTTATTGGAGGGACTTACTGGAAAGACAGTCCTACTAGTGACTCATCAAGTTGACTTCCTCCCAGCATTTGATTCTGTTCTGTTGATGTCAGATGGAAAATCCCTACAAGCTGCTCCTTATCACGATCTATTGACCTCAAGCCAAGAATTTCAGGACCTAGTCAATGCTCACAAAGAGACTGCTAGTTCTGACCGGCTTGTAGATTTCACTTCTTCCCAGAGACATTCAAATTCTGGTAGAGAAATTATACAACCTTTCAAACAGAAGCAGTATAAAGAATTAAATGGTGATCAATTAATTAAGCAAGAAGAGAGAGAAAGAGGAGACACAGGGTTCAAGCCTTATTTACAGTATCTGAATCAGAGTAGAGGATACATATACTTCTCTGCGAGTTGTCTTTGTTTCCTTATGTTTGTCATTTGCCAGATAACTCAAAACTCATGGATGGCTGCTAATGTTGACAATCCCCATGTCAGCACGTTGCAACTGATTCTGGTTTACATGCTGATAGGAGTTGGCTCCACAATTTTCTTAATGATTAGAATTTTTCTTTCTGTTGCTTTGGGTTTTCAATCTTCGAAATCATTATTTTCACAGTTAATGAACTCCCTTTTTCGTGCACCTATATCCTTTTATGACTCCACACCTTTGGGAAGGATACTTAGTCGGGTCTCAGCAGATCTGAGCATTGTGGATCTTGATCTCCCACTTAACCTCGCTTATACTGTGGGAGGTGCTATAAGCTATTATGCTGATCTTATAGTTTTAACAGCCATCACTTGGCAAGTCTTGTTTATCACTATACCCATGGTTTATGTCGTTTTGCGCTTGCAGAGACACTACTATGCATGTGCAAAAGAATTTATGCGGATGGAGGGCACAACAAAATCCTCCGTAGCTAATCATGTAGCTGAAACTGTTGCTGGATCTATGACAATAAGGGCATTTGAGGGGGAAGATCGTTTTTTCAGGAGAAATCTTGATCTAATTGATGCCAATGCTAGTCCTTTCTTCCATATTTTTTCCTCAAGTGAGTGGCTGATACAACGGTTAGAAACAGTCTATGCGATTGTTCTTTGCTCCACGGCACTTTGCATGGTTATGCTTCCACCTGGGACTTTAACCTCTGGATTTATTGGCATGGCTCTATCTTATGGCCTTTCATTAAACGAGTCCTTAGTATATTCAGTTCAAAGCCAATGCATTCTTGCAAATTACATAGTATCTATAGAGAGGCTAAGTCAATACATGCATATACCAAGTGAGGCTCAAGAAGTCGTAGAAGGAAATCGTCCTCCAGTTAATTGGCCAGTTGCAGGCAAAGTAGAAATAGAAGATTTGCAGATACGATACAGGCCTGAGGAGCCACTTGTACTACATGGTATAACATGCACATTTGAAGGAGGGCACAAGATTGGTATTGTTGGTAGGACAGGCAGTGGAAAATCCACTCTAATAGGTGCTTTGTTTCGTCTTGTGGAGCCAGCTGGAGGAAAAATCATAGTGGATGGCATAGACATCTCTTCTATTGGCCTTCATGATTTGAGATCAAGTATTGGAATAATACCTCAGGATCCTACCCTTTTCATTGGAACCGTTAGATATAATTTGGACCCTTTATCGCAACACTCTGATCAAGAAATATGGGAGGTTCTCGGAAAGTGTCAATTGCGAGAGGCTGTCAAAGATAAAGGTGGCTTAGACACTTCAGTTGTTGAAGATGGATCAAATTGGAGCACCGGACAAAGGCAATTATTCTGTTTGGGACGTGTTCTTTTGAGGAGGAGTAGGATATTAGTGCTTGATGAAGCAACTGCATCAATCGATAATGCAACTGATTTGATTCTGCAGAAAACCATCAAGACTGAATTTGCAGATTGTACGGTAATTACCGTAGCCCACAGGATACCAACTGTGATGAATTGCACTATGGTTCTTGCCATCAATGAGGGAAAGCTAGCTGAGTATGATGAGCCAATGAAGTTGATGAAGAGAGAAAGATCGTTATTTAGGCAACTTGTTCAAGAAGACTGGTCTCATTTTCAGTCTACAGAATCACATGGGAAGTTGTGA 4437 0.3998 MEDFWSMTCGDSGCSETGVEPFCHDFRLLKNPSTCINHLLTICFDVLLLIIMSLVMIHKCLSGPIRGPIRAERLSKLQLVSAITNGSLGMLHLCIGIWVLEEKLRRMHSALPLNWWLLELFQGFTWVLIGLTLSLQLKQFQRAWLWMFSFLVFFVSGLFCALSISYAFSSRELSLKAALDVLSFLGAALLLLCTYKVCKREEEIDESLYAPLNSQFNEVHPVSYVTPFAKARFFSRMSFWWLNPLMKRGQERTLHDEDMPKLWESERAERCYFLFVEQLNRQKQKDPSSRSSLLWTLILCHQREILISGFFALLKVLTLSSCPVILNAFVLASEDNGNFKYEGYALAISLFFVKIIESLSQRQWYFRCKLVGMKVKSLLTAAIYKKQLRLSNAARLIHSGGEITSYVTIDAYRVGEFPFWFHQTWTTILQLCIALLVLIRAVGLATIASLVVIVLTVLFNAPLAKLQHKFLSKLLVARDERLKASSEALVNVKVLKFYAWEIHFKDAIQSLRNVELKWLSSVLLQKAYNVIIYWSAPMFVSAATFMACYFLKVPLHANNLFTFVATLRLVHDPISTIPDVIGVVIQAKIAFARIVKFLEEPELQRENVRKVCFVEQLKGTILINSADFSWECNASKPTLRNINLKVSPGQKIAICGEVGSGKSTLLAAILGEIPYTKGNIEVYGKFAYVSQTAWIQRGTIQENILFGSALDVQRYQETLHRSSLVEDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYILDDPFSAVDAHTATNLFNKYLLEGLTGKTVLLVTHQVDFLPAFDSVLLMSDGKSLQAAPYHDLLTSSQEFQDLVNAHKETASSDRLVDFTSSQRHSNSGREIIQPFKQKQYKELNGDQLIKQEERERGDTGFKPYLQYLNQSRGYIYFSASCLCFLMFVICQITQNSWMAANVDNPHVSTLQLILVYMLIGVGSTIFLMIRIFLSVALGFQSSKSLFSQLMNSLFRAPISFYDSTPLGRILSRVSADLSIVDLDLPLNLAYTVGGAISYYADLIVLTAITWQVLFITIPMVYVVLRLQRHYYACAKEFMRMEGTTKSSVANHVAETVAGSMTIRAFEGEDRFFRRNLDLIDANASPFFHIFSSSEWLIQRLETVYAIVLCSTALCMVMLPPGTLTSGFIGMALSYGLSLNESLVYSVQSQCILANYIVSIERLSQYMHIPSEAQEVVEGNRPPVNWPVAGKVEIEDLQIRYRPEEPLVLHGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDISSIGLHDLRSSIGIIPQDPTLFIGTVRYNLDPLSQHSDQEIWEVLGKCQLREAVKDKGGLDTSVVEDGSNWSTGQRQLFCLGRVLLRRSRILVLDEATASIDNATDLILQKTIKTEFADCTVITVAHRIPTVMNCTMVLAINEGKLAEYDEPMKLMKRERSLFRQLVQEDWSHFQSTESHGKL* 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2711 1478 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 586 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2711 1478 CDD ABC_6TM_ABCC_D2 916 1205 IPR044726 GO:0140359
Lja2g2711 1478 SMART AAA_5 1256 1439 IPR003593 -
Lja2g2711 1478 SMART AAA_5 648 821 IPR003593 -
Lja2g2711 1478 Gene3D ABC transporter type 1, transmembrane domain 878 1212 IPR036640 GO:0005524|GO:0016021
Lja2g2711 1478 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 70 1475 - -
Lja2g2711 1478 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 70 1475 - -
Lja2g2711 1478 Gene3D ABC transporter type 1, transmembrane domain 293 597 IPR036640 GO:0005524|GO:0016021
Lja2g2711 1478 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1230 1463 IPR003439 GO:0005524
Lja2g2711 1478 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1193 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2711 1478 CDD ABCC_MRP_domain2 1228 1447 - -
Lja2g2711 1478 Gene3D - 1213 1465 IPR027417 -
Lja2g2711 1478 Gene3D - 598 864 IPR027417 -
Lja2g2711 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 844 IPR027417 -
Lja2g2711 1478 CDD ABC_6TM_ABCC_D1 307 594 IPR044746 GO:0140359
Lja2g2711 1478 SUPERFAMILY ABC transporter transmembrane region 905 1210 IPR036640 GO:0005524|GO:0016021
Lja2g2711 1478 Pfam ABC transporter transmembrane region 931 1172 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2711 1478 Pfam ABC transporter transmembrane region 305 563 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2711 1478 Pfam ABC transporter 1247 1394 IPR003439 GO:0005524
Lja2g2711 1478 Pfam ABC transporter 639 773 IPR003439 GO:0005524
Lja2g2711 1478 CDD ABCC_MRP_domain1 621 821 - -
Lja2g2711 1478 SUPERFAMILY ABC transporter transmembrane region 294 599 IPR036640 GO:0005524|GO:0016021
Lja2g2711 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1220 1462 IPR027417 -
Lja2g2711 1478 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524
Lja2g2711 1478 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 844 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2711 Lja-Chr2 39438276 39448933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2711 600 873 Calmodulin-binding Proteins AT2G36910 28.523 4.63e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2711 K05666 - gmx:100787314 2193.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2711 2 39438276 39448933 Lja5g0693 5 6233585 6248400 ECH
Lja2g2711 2 39438276 39448933 Lja2g2711 2 39438276 39448933 ECH
Lja2g2711 2 39438276 39448933 Lja5g0693 5 6233585 6248400 PCT