Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2710 ATGATGGAGGAATTCTGGACCATGACTTGTGGGGATTATAATTCTTCTGAAACAGGAGGAAAGCCTTTCTGTTATGATTTAAAGTTTTTGAAAGATCCTTCCAAATGCATCAACCATTTGTTGGCCATTTCCTTTGATGTGTTACTCTTGATCATGCTGTCATTCATTATGATCCAAAAGTCTTTGTTTAGACCACATCGGGGTCGACGTTGGGAGGAAAAGTATTCAAAGTTGCAGCTAGTTTCTGCCATAACCAATGGTTCTCTGGGGCTGTTCCATTTATGCTTAGGAATCTGGGTTTTAGAGGAGAAGTTAAGGAAAAACCACACAGCTTTTCCTCTTAATTGGTGGCTGCTAGAACTCTTTCAGGGAATCACATGGTTGTTAGCTGGTTTAACTGTAAGCCTTAAAGTAAATCAACTTCCAAGAGCATGCTTATGGCTGTTTTCGACTGTTCTGTTCTTTGTTTCTGGTGTTTTTTGTGCTATATCATTGTCTTATGCAATAAACACCAGAGAATTTCCCCTCAAAGCAGTTTTAGATATTCTATCTTTTCCAGGAGCAATTTTGCTTTTCTTGTGCACATTCAAATCATCCCAATGTGAAGAGACTAGTCAAGAAATTGATGAAAGACTTTATACCCCTTTAGATTGCAAGTTCAATGATGTTGATCTTGTAACACCATTTTCCAGAGCTGGATACTTGAGTAGAATATCATTTTGGTGGTTGAATCCTTTGATGAAAAGGGGTCAAGAGAAAACACTTCAGGATGAGGATATCCCAAAGCTACGAGAACTTGACCGCGCAGAAAGTTGTTACTTGTCATTTGTTGAACACTTGAACAGACAAAGAGAAAAGGATATCCCATTGTCATCGTCATCAGTTTTATGGACAATACTTTCATGTCACCGGAATGAGATTCTGGTGACAGGATTCTTTGCTTTCCTCAAGGTACTCACTCTCTCTGCTGGTCCTCTACTTCTGAATGCCTTCATATTGGTTGCTGAGGGTAATCAAAGTTTTAAATATGAAGGTTATGTGCTGGCCATGTCACTTTTCTTTATAAAGATCATAGAATCCCTTTCCCAAAGGCAGTGGTATTTCAACAGTAGACTTGTTGGCATGAAAGTTAGATCACTACTTACAGCAGCCATTTATAAAAAGATATTGCGACTTTCCAATGCTTCTAGGCTGGTTCACTCTGGTGGTGAGATAATGAACTATGTGACAGTAGATGTTTATAGGATTGGAGAATTTCCATTTTGGTTTCACCAATCTTGGACAACAATCCTCCAACTATGTATTGCATTAGTAATTCTCTTCCGCGCTGTTGGGCTCGCAACAATTGCGTCGTTGGTGGTAATAGTTCTTACTGTGCTTTGCAACACTCCACTAGCAAAGTTGCAGCACAAGTTTCAGAGCAAACTAATGGTGGCACAAGATAAGAGACTCAAGGCTAGTTCGGAGGCTTTAGTGAATATTAAAGTGCTGAAGCTATATGCATGGGAGACACATTTTAAAAATTCTATAGAGAACTTAAGAAGTGTAGAGCTAAAACTGTTGTCTTCACTGCAACTGAAAAAGGCATACAACATCTTTCTCTTTTGGACCGCGCCAATGTTGGTGTCTTCTGCTTCCTTTTTGACATGCTACTTCCTGAATATTCCTTTGCATGCAAACAATGTTTTCACTTTTGTCGCGACTTTGCGCCTTGTGCAAGATCCAATTACGGCCATCCCGGATGTTGTTGGGGCGGCCATTCAGGCAAAAGTTGCGTTCGCACGGATTTTTAAATTTCTTGAGGCACCAGAACTGCAGGATGCGGATTTCAAGAACAGGTTCATTAGTGACAACAATCTCAGGGGATCAATTTTAATCAAATCTGCTGAATTTTCATGGGAAGGTAATGTATCAAAGCCAACACTGAGGAACATAAATTTAGAGGTTAGACCTGGACAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCTACCCTCTTAGCCACAATTCTTGGAGAAATTCCTAATACAAAGGGTGTTATTGACGTTTATGGGAAGCTGGCATATGTTTCCCAAACAGCATGGATACAGACAGGTACAATCCAGGACAACATTTTGTTTGGATCTGATTTGGATGCTCAAAGATATCAAGAAACTCTTCAAAGATCTTCACTAGTGAAGGACCTTGAGTTGTTTCCCCATGGTGACCTCACTGAAATAGGTGAAAGAGGAGTAAACCTCAGTGGAGGACAAAAGCAGCGAGTTCAACTCGCCCGTGCTCTTTATCAAAATGCTGATGTATATCTTTTGGATGATCCATTCAGTGCTGTTGATGCGCATACTGCTTCAAATTTGTTCAATGAATATATCATGGAAGGCCTTAAGGGGAAAACTGTCTTACTTGTGACTCATCAAGTTGACTTCCTCCCAGCATTTGATTCTGTTTTGTTGATGTCAAATGGGGAAATCCTAGAAGCTGCTCCTTATCACCATCTATTGACCTCAAGCAAGGAATTCCAAGACCTTGTCAATGCTCACAAGGACACTGCCGGTTCTAAGCAGCTTGTGGATGTTACTTATTCGCCACGACATTCAAGTTCTGCTAGAGAAATTACACAAGCTTTCATAGAGAAGCAGTTTAAAGATGAAAGTGGAAATCAATTAATTAAACAAGAAGAAAGAGAGATAGGAGACACAGGATTAAAGCCTTACTTACAGTATCTGAATCAGATGAAAGGCTACATATATTTCTTTCTGGCTTCCCTTTGCCACCTTACATTTGTCATTTGTCAGATATTGCAAAATTCATGGATGGCTGCCAATGTTGACAATCCCCATGTCAGCACATTGAAACTCATCATAGTTTACTTCCTAATTGGGGTTACTTCAACATTTTTCATGCTGATCAGAAGTCTACTTGTAGTTGCTTTGGGTATTCAATCATCAAAATTACTATTTCTACAGTTAATGAACTCGCTATTTCGCGCACCTATGTCTTTTTATGACTCTACACCACTGGGAAGGATACTTAGTAGGGTCTCATCAGATCTGAGCATTATGGATCTTGATCTCCCATTTATCCTCACTTATGCTGTGGGAGGCACTATAAACTGTTATTCAAATCTCACAGTTTTAGCAGTTGTCACTTGGCAAGTCTTGATTGTCTCTATACCAATGATTTATATTGCGATCCGCTTGCAGAGATACTACTTTGCCACGGCAAAAGAAGTGATGCGGATGAATGGCACAACAAAATCCTTTGTGGCTAATCATTTAGCTGAAACTGTTGCTGGAGCTATGACAATAAGGGCTTTTGAGGATGAAGATCGTTTTTTCAACAAGAATCTAGACCTAATTGATGTCAATGCTAGTACTTTCTTCCATAGTTATGCCTCAAATGAGTGGTTGATCCAACGGTTAGAAGTAGTTGCTGCAGTTGTTCTAGCCTCAGCAGCATTATGCATGGTTATGCTTCCACCTGGGACTTTCACCTCGGGATTTATTGGCATGGCTCTATCTTATGGACTTTCACTAAACGCTTCCTTAGTATTTTCCATTCAAAGTCAATGCAATCTTGCAAATTATATAATATCTGTAGAGAGGCTGAATCAGTATATGCATATACCAAGTGAGGCCCCAGAAGTAATAGAAGGAAATCGTCCTCCTTTGAATTGGCCAGTTGCAGGCAAAGTAGAAATAAATGACTTGAAGATACGATACAGACCTAAGGGACCACTTGTGCTTCATGGAATCACTTGCACATTTGAAGCAGGACACAAGATTGGTATTGTTGGCAGGACAGGTAGTGGGAAATCCACACTGATAAGTGCTTTGTTTCGTCTTGTGGAGCCAGCTGGAGGAAAAATTGTAGTTGATGGCATAGACATCTCTACTATTGGACTTCATGATTTGAGGTCATGTTTTGGTGTTATACCTCAGGATCCTACCCTCTTTCATGGGACAGTTAGATATAATTTGGACCCTTTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTTGGGAAATGTCAATTGCGAGAAGTTGTCCAAGATAAAGAAGAGGGCTTAGACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTCTGTTTGGGGCGCGCACTTTTGAGAAGAAGTAGGATATTGGTGCTGGATGAAGCAACTGCATCGATCGATAATGCAACTGATTTGATTCTGCAAAAAACCATTAGGACTGAGTTTGCAGATTGCACAGTGATCACAGTTGCACACAGGATACCAACAGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTAGCGGAGTATGATGAGCCGACGAACCTGATGAAGAGAGAAGGATCGCTGTTCAGGCAACTTGTAAATGAGTACTGGTCTCATTCTCAGTCTGCAGAATCACATTGA 4440 0.4029 MMEEFWTMTCGDYNSSETGGKPFCYDLKFLKDPSKCINHLLAISFDVLLLIMLSFIMIQKSLFRPHRGRRWEEKYSKLQLVSAITNGSLGLFHLCLGIWVLEEKLRKNHTAFPLNWWLLELFQGITWLLAGLTVSLKVNQLPRACLWLFSTVLFFVSGVFCAISLSYAINTREFPLKAVLDILSFPGAILLFLCTFKSSQCEETSQEIDERLYTPLDCKFNDVDLVTPFSRAGYLSRISFWWLNPLMKRGQEKTLQDEDIPKLRELDRAESCYLSFVEHLNRQREKDIPLSSSSVLWTILSCHRNEILVTGFFAFLKVLTLSAGPLLLNAFILVAEGNQSFKYEGYVLAMSLFFIKIIESLSQRQWYFNSRLVGMKVRSLLTAAIYKKILRLSNASRLVHSGGEIMNYVTVDVYRIGEFPFWFHQSWTTILQLCIALVILFRAVGLATIASLVVIVLTVLCNTPLAKLQHKFQSKLMVAQDKRLKASSEALVNIKVLKLYAWETHFKNSIENLRSVELKLLSSLQLKKAYNIFLFWTAPMLVSSASFLTCYFLNIPLHANNVFTFVATLRLVQDPITAIPDVVGAAIQAKVAFARIFKFLEAPELQDADFKNRFISDNNLRGSILIKSAEFSWEGNVSKPTLRNINLEVRPGQKVAICGEVGSGKSTLLATILGEIPNTKGVIDVYGKLAYVSQTAWIQTGTIQDNILFGSDLDAQRYQETLQRSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRVQLARALYQNADVYLLDDPFSAVDAHTASNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSVLLMSNGEILEAAPYHHLLTSSKEFQDLVNAHKDTAGSKQLVDVTYSPRHSSSAREITQAFIEKQFKDESGNQLIKQEEREIGDTGLKPYLQYLNQMKGYIYFFLASLCHLTFVICQILQNSWMAANVDNPHVSTLKLIIVYFLIGVTSTFFMLIRSLLVVALGIQSSKLLFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDLDLPFILTYAVGGTINCYSNLTVLAVVTWQVLIVSIPMIYIAIRLQRYYFATAKEVMRMNGTTKSFVANHLAETVAGAMTIRAFEDEDRFFNKNLDLIDVNASTFFHSYASNEWLIQRLEVVAAVVLASAALCMVMLPPGTFTSGFIGMALSYGLSLNASLVFSIQSQCNLANYIISVERLNQYMHIPSEAPEVIEGNRPPLNWPVAGKVEINDLKIRYRPKGPLVLHGITCTFEAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISTIGLHDLRSCFGVIPQDPTLFHGTVRYNLDPLSQHTDQEIWEVLGKCQLREVVQDKEEGLDSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLAEYDEPTNLMKREGSLFRQLVNEYWSHSQSAESH* 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2710 1479 CDD ABC_6TM_ABCC_D1 309 596 IPR044746 GO:0140359
Lja2g2710 1479 Gene3D ABC transporter type 1, transmembrane domain 290 604 IPR036640 GO:0005524|GO:0016021
Lja2g2710 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1223 1466 IPR027417 -
Lja2g2710 1479 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Lja2g2710 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Lja2g2710 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1196 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2710 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 847 IPR003439 GO:0005524
Lja2g2710 1479 Gene3D - 1217 1469 IPR027417 -
Lja2g2710 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1467 IPR003439 GO:0005524
Lja2g2710 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 71 1479 - -
Lja2g2710 1479 CDD ABCC_MRP_domain1 624 824 - -
Lja2g2710 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 847 IPR027417 -
Lja2g2710 1479 SUPERFAMILY ABC transporter transmembrane region 914 1213 IPR036640 GO:0005524|GO:0016021
Lja2g2710 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Lja2g2710 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 308 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2710 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Lja2g2710 1479 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 71 1479 - -
Lja2g2710 1479 Gene3D ABC transporter type 1, transmembrane domain 880 1214 IPR036640 GO:0005524|GO:0016021
Lja2g2710 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Lja2g2710 1479 SUPERFAMILY ABC transporter transmembrane region 296 604 IPR036640 GO:0005524|GO:0016021
Lja2g2710 1479 Pfam ABC transporter transmembrane region 308 569 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2710 1479 Pfam ABC transporter transmembrane region 917 1169 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2710 1479 Gene3D - 605 862 IPR027417 -
Lja2g2710 1479 SMART AAA_5 1259 1442 IPR003593 -
Lja2g2710 1479 SMART AAA_5 651 824 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2710 Lja-Chr2 39420237 39427164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2710 618 871 Calmodulin-binding Proteins AT2G36910 27.407 7.13e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2710 K05666 - gmx:100787314 2393.23