Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2680 ATGAGAGCCTTAGAACAATTTGATGCTTCTCAAACTCAGTCATCATCTTCTTCATCTTCCTCCATTGATAGCAACAACCTCCCTAAACCACCACCACCACCACCCTCTTCATCTTCATCTCTCTGCCTCTCTAGTGTCTGTAGAAGAAACAGAACAGATTTGAGCACTGACTTGAAACTTGGTCTCAGCATCTCTCATTCTTCTCAATCAGAGTCAGCATACAATTCAACACCACCAAGGGAGGAAACTTTTGATTGGCCACCAATTAAGTCCACATTGAGGAGCACCCTTGTTGAGAAACAAAACCATCGGAGCCAAACACCTTCTTTGTTTGTCAAAGTCTACATGGAAGGAATCCCCATTGGTAGAAAATTAAACCTCTTGGAACATCATAGCTATGATGGGCTTGTAAAATCCCTTGGCCACATGTTTAGGACCATCATTCTTTGTCCTAACTCTCAACCAAACAACTCTGGGAATTTTCATGTGCTGACTTATGAGGATCAAGAAGGGGATTGGATGATGGTTGGAGATGTGCCTTGGGAGATGTTCTTGACCAGTGTGAAGAGGCTGAAGATCACAAGAGCTGATAGATGCTAG 600 0.4317 MRALEQFDASQTQSSSSSSSSIDSNNLPKPPPPPPSSSSSLCLSSVCRRNRTDLSTDLKLGLSISHSSQSESAYNSTPPREETFDWPPIKSTLRSTLVEKQNHRSQTPSLFVKVYMEGIPIGRKLNLLEHHSYDGLVKSLGHMFRTIILCPNSQPNNSGNFHVLTYEDQEGDWMMVGDVPWEMFLTSVKRLKITRADRC* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2680 199 MobiDBLite consensus disorder prediction 66 87 - -
Lja2g2680 199 MobiDBLite consensus disorder prediction 1 25 - -
Lja2g2680 199 SUPERFAMILY CAD & PB1 domains 103 193 - -
Lja2g2680 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 199 - -
Lja2g2680 199 MobiDBLite consensus disorder prediction 1 43 - -
Lja2g2680 199 Pfam AUX/IAA family 44 195 IPR033389 -
Lja2g2680 199 Gene3D - 103 199 - -
Lja2g2680 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 199 IPR003311 GO:0005634|GO:0006355
Lja2g2680 199 ProSiteProfiles PB1 domain profile. 109 198 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2680 Lja-Chr2 37982425 37984817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2680 88 199 B3 DNA Binding Superfamily AT3G61830 32.456 2.15e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja2g2680 AUX_IAA 7.1e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2680 K14484 - gmx:100818083 282.722