Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2669 ATGGTATCCAAAAACCCGAATCCGCCGGAAGGGTTCTGTTTGGACCCGAGCACCATGGCTTTACCGGGTCTCAGCCCCTTCGCCTCCGTCTCTTCCGCCGCGGAGGACGCCGCCAAGAAGATCCGGAAGCCCTACACTATTACCAAGTCTAGGGAGAACTGGACAGAACCCGAGCACGACAAGTTCCTCGAAGCTCTTCAACTATTTGACCGTGACTGGAAGAAGATTGAAGCATTTATTGGATCAAAGACTGTTATACAGATACGTAGTCATGCACAGAAATACTTTCTAAAGGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCGAGGCCGAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTACAAAAAGTGCTCCTGTACTCTCACAAGTATCAGGATCTATTCAATCTTCATCTGCTTTGCTTGAACCTGGATATATTAAGCATGATTCCTTACCAATGCTTAAAACTCCTACTATAAACACTGCTGTGTCGTCCTGGTCAAACCACACCTTGCAAACAACCAATTTATTGCATGTGCCGAAAGTGAATAATTCTTGCAGTAGCTCTGAAAGCACTCCTAAAGTTCGACCAGTTGGTGAATCTAATGGTCAAGGGAATAATAGCCATCCTTTGAGAGTTCTTCCAGATTTTTCTCAGGTATATGGCTTCATTGGCAGTGTATTTGACCCAGATGCAACTGAGCATGTGCAGAGACTCAAACAGATGGACCGGATAGATGTTGAGACGGTGCTACTGCTGATGAGAAACTTGTCGATCAATTTGACTAGTCCAGATTTTGAGGATCATAGAAAGCTGCTTTCATCATATGAGGCTGAAGTGGAGCCCAATAACTATATCAATGCAGAAAGACCCATACATGATGAGAAGTTGAGAAGCGCTACATAG 921 0.4473 MVSKNPNPPEGFCLDPSTMALPGLSPFASVSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKATKSAPVLSQVSGSIQSSSALLEPGYIKHDSLPMLKTPTINTAVSSWSNHTLQTTNLLHVPKVNNSCSSSESTPKVRPVGESNGQGNNSHPLRVLPDFSQVYGFIGSVFDPDATEHVQRLKQMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEAEVEPNNYINAERPIHDEKLRSAT* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2669 306 MobiDBLite consensus disorder prediction 189 215 - -
Lja2g2669 306 CDD SANT 53 96 IPR001005 -
Lja2g2669 306 ProSiteProfiles SANT domain profile. 49 100 IPR017884 -
Lja2g2669 306 PANTHER PROTEIN REVEILLE 6 20 298 - -
Lja2g2669 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 100 IPR017930 -
Lja2g2669 306 MobiDBLite consensus disorder prediction 101 133 - -
Lja2g2669 306 PANTHER SWI/SNF COMPLEX-RELATED 20 298 - -
Lja2g2669 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 98 IPR006447 GO:0003677
Lja2g2669 306 ProSiteProfiles Myb-like domain profile. 46 96 IPR001005 -
Lja2g2669 306 SMART sant 50 98 IPR001005 -
Lja2g2669 306 Pfam Myb-like DNA-binding domain 51 96 IPR001005 -
Lja2g2669 306 Gene3D - 53 101 - -
Lja2g2669 306 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2669 Lja-Chr2 37645032 37659897 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja2g2669 Myb_DNA-binding 7.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2669 - - gmx:778054 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2669 2 37645032 37659897 Lja5g0668 5 6025290 6029435 ECH
Lja2g2669 2 37645032 37659897 Lja2g2669 2 37645032 37659897 ECH