Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2654 ATGGATCCTTATGGTTCTATTGATGACAAGTGTGAAAATAGACTCTATATTGGTAACCTTGATCTCAGAATTACAGAAGCTGCTCTGCTTAAATTGTTCTCTCCTTATGGAAAGATCGTTTCTGAGGACTTCTTATATCACACTCGTGGCCCAAAACGCGGGGAACCGCGCGGTTTTGCTTTTATCCAGTATAGCACGAAAGAGGAAGCAGAATTGGCCAAGGAGAAAATGCATGGAAGGTTCGCTTGCGGCCGGCCATTGGTTGTTCGTCTTGCTAGCGAGAAGTACATGTTGGAAACAGCTGATATGTCTTCCAAAGTAGCAGGTGGAGGGCACAAGGTGCATCTCACCGGTGGCGGTGTGGGACAGACGACAAGTCGTACTGCAAAAATAGCTGCAATAAAGAATAAATTGAAATCCTTAGAGGAGGAGAGTTCTGGGACCAAGAAACAGAAGCAAACTTGA 465 0.4516 MDPYGSIDDKCENRLYIGNLDLRITEAALLKLFSPYGKIVSEDFLYHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLASEKYMLETADMSSKVAGGGHKVHLTGGGVGQTTSRTAKIAAIKNKLKSLEEESSGTKKQKQT* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2654 154 SUPERFAMILY RNA-binding domain, RBD 8 98 IPR035979 GO:0003676
Lja2g2654 154 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Lja2g2654 154 Gene3D - 10 102 IPR012677 -
Lja2g2654 154 CDD RRM_RBM18 14 93 IPR039157 -
Lja2g2654 154 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Lja2g2654 154 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 4 153 - -
Lja2g2654 154 SMART rrm1_1 14 90 IPR000504 GO:0003723
Lja2g2654 154 Coils Coil 131 151 - -
Lja2g2654 154 PANTHER RNA-BINDING PROTEIN 18-RELATED 4 153 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2654 15 95 Eukaryotic Initiation Factors Gene Family AT3G16380 37.037 2.59e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2654 K24527 - gmx:100804800 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2654 2 37130126 37132314 Lja2g2654 2 37130126 37132314 ECH