Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2650 ATGTCGTCGGGTTTCACCGGCGGCGGTGGTGGTGCGCCGGAGTTCTTCACCGGCAGATCCACCATCAACAACCTCACCACCACCGTTCCCATCACCAACAACCTCCACCACCACTCTCTCTACCGAACCCAGCAACAACAACAACAACATCATCAATCCTCTCCCATATTTCTAGATCCTTCATCCCAATTCATTCAACGCCAAACACCAACAATAACAACAACAACCTTCACCGGTAAACGCACCTTGGCTGAATTCCAAACACAACACCACCAGAACCAAATCTTCAACAACAACAACAGCAATAGCAATAGCAATAGCAATTTCACCCATAACCAATTTCTCTCTAACCTTCTCCTTCGTTCTGTGAAGCCAAGAACAACCATGTTTCCTCACATGGATTTTTCCGTTCCTTCTCAATTGCAAAACCCAAACAATTTGGCCTTCCAAACGCAGCGTTTAGGTGTGCCTTTGCTTCATCAACTTCGCCCTCAACCCATTAACCTCCCGGACCAGAATTTCCCATACCGGAACTCCAATTTGGGTCTGCACCGGGTTCAGAATCAGAGTCAGACCGATGATGAACCGGAGAAGAAGATCATGAACCACCAGCTTCTGGAGTTGGAGAAGCAGCTTCTAGAAGACAACGACGAAGGAGAAGAACCTGATGCTGCTTCTGTCATCACAACCAGTGAGTGGTCAGAGACTTATCAGAATCTCATCGGTCTAGTTTCGGGTTCAGGTTCCGGGTCGGGTTTGACTCAGAAACCCGCTTCGTCATCTCCTACTTCCTCAACGACGTCGTCTACCTCTTCCTCTGCGGCTTCACCTGCCTCGGTGTGTTCCAAACAGACGCTGATGGAAGCCGCATCTGCAATCGCTGAAGGGAAAAACGACGCCGCGTCGGAGATCCTAACCCGTTTGGTTAACCCGACTGGGAATTCGGATCAGCGGTTAACCGATTGCATGGTTTTGGCTCTGAAATCGCGGATGAGCGCGGCGGAGAATCCTCCCCCGGTGGCGGAGCTTTTCAGCAGGGAACACGCCGAGTCGACTCAGCTTCTGCTTGAGAACTCGCCTTGCTTCAAGGTTGGGTTAATGGCTGCGAATCTCGTGATTCTTGAAGCGGCATTTGAGGAGAACGTGAATGGGAAAGGGTTCTGCGTGGTGGATTTTGAGATTGGACAGGGGAAGCAGTACTTTACGCTTCTTCACGCGCTGTCAACGCGCGGGCAGAATGGGAAGGTTCCGCCGCCGATGAAGATTGCAGCGGTGGCGGAGAGCGGCGGCGAGGAAAGGGTGAGGGCGGTTGGGGAGATGCTGAGCCGGCAAGCGGAGCGGTTGAGGATCGGGTTCGAGTTTCGTGTGGTGTCTGTGCCGAATAAACTCGCTGATTTGACTCGGGAGTCACTCGGTTGCGACTCGGAGGAGACGCTGGTGGTGAACCTCGCGTTCAAGCTGAACCGCATCCCTGATGAGAGCGTTTCAACGGAGAATCCACGTGACGAGCTTTTAAGGCGCGTGAAGAAGCTCGCCCCGCGCGTGGTGACTGTTTTGGAGCAGGAGGTAAACGCCAATACGGCGCCGTTTTTGGCGCGCGTGGCTGAGTCATGGTCCTACTATAGTGCCCTGTTCGACTCGGTCGAGTCAGCAATGGGGAAGGAAAACCCGGACCGAGTCAAGGTGGAGGAGGGACTGAGCCGGAAGCTATGCAACTCGGTGGCTTGCGAGGGGAGGGACCGCGTGGAGCGGTGCGAGGTGTTCGGGAAATGGCGCGCGCGAATGAGCATGGCGGGGTTCCAGCTGAAACCGCTGAGTCAAAACCTGGCTGAGTCGATTAATTCGCGACTCGCCGCCGGGAACAACCGAGTCAACCCGGGACTCACCGTGAAAGAAGAGAACGGCGGGATATGCTTTGGTTGGATGGGAAGGACACTCACCGTCGCATCTGCTTGGCGTTAA 1962 0.5408 MSSGFTGGGGGAPEFFTGRSTINNLTTTVPITNNLHHHSLYRTQQQQQQHHQSSPIFLDPSSQFIQRQTPTITTTTFTGKRTLAEFQTQHHQNQIFNNNNSNSNSNSNFTHNQFLSNLLLRSVKPRTTMFPHMDFSVPSQLQNPNNLAFQTQRLGVPLLHQLRPQPINLPDQNFPYRNSNLGLHRVQNQSQTDDEPEKKIMNHQLLELEKQLLEDNDEGEEPDAASVITTSEWSETYQNLIGLVSGSGSGSGLTQKPASSSPTSSTTSSTSSSAASPASVCSKQTLMEAASAIAEGKNDAASEILTRLVNPTGNSDQRLTDCMVLALKSRMSAAENPPPVAELFSREHAESTQLLLENSPCFKVGLMAANLVILEAAFEENVNGKGFCVVDFEIGQGKQYFTLLHALSTRGQNGKVPPPMKIAAVAESGGEERVRAVGEMLSRQAERLRIGFEFRVVSVPNKLADLTRESLGCDSEETLVVNLAFKLNRIPDESVSTENPRDELLRRVKKLAPRVVTVLEQEVNANTAPFLARVAESWSYYSALFDSVESAMGKENPDRVKVEEGLSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGFQLKPLSQNLAESINSRLAAGNNRVNPGLTVKEENGGICFGWMGRTLTVASAWR* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2650 653 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 72 652 IPR005202 -
Lja2g2650 653 Coils Coil 198 218 - -
Lja2g2650 653 MobiDBLite consensus disorder prediction 248 279 - -
Lja2g2650 653 Pfam GRAS domain family 283 653 IPR005202 -
Lja2g2650 653 PANTHER SCARECROW-LIKE PROTEIN 8 72 652 IPR030013 -
Lja2g2650 653 ProSiteProfiles GRAS family profile. 273 653 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2650 Lja-Chr2 37010318 37012712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2650 77 653 GRAS Transcription Factor Family AT5G52510 49.114 2.74e-155 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja2g2650 GRAS 1.1e-95 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2650 - - gmx:100788551 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2650 2 37010318 37012712 Lja2g2650 2 37010318 37012712 ECH
Lja2g2650 2 37010318 37012712 Lja5g0660 5 5960994 5962910 PCT