Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2645 ATGGGAGGAGGTGAACATGGATATAAGAAGGGGTTCTGGAATGTGGATGAAGACAGAGTTCTAATGAGTTATGTCAAGGAACATGGAATGGGGAAATGGAATCGCATAGCTAAAGTTACAGCAGGGTTGAAGAGAAGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATCTGAGTCCTGATGTTAAGCGTGGGGGCTTCTCACAAGATGAAGAAGATCTTGTTATTCGCCTCCACAAGCTCCTTGGAAACAGGTGGTCTTTGATTGCTGGGAGAATTCCAGGGAGAACAGACAACCAAGTGAAGAACTATTGGAACACTCATTTAAGCAAGAAGCTTGGTGTTAACAAGGGAAAAAGCAAGTTTCATGCATCTGATCCACAAACTGTCCCTAAGGAACCAAAGGAAAATTCAGAGTCAATTGGTGAGGAAGAAGGTGAAAAGCATTTGCAAGCAAGCTCATGTGGAGATATGAGCTTTGCAAGCATATATGAAGGGATCATGACAGATGATTTTGAAACTGCATTTTGTTTTGCTAACACTGATCAGCTGAATCTTCAGAGCCCTTACTTTTCGGAGTCTTTTCTTCAAGAGTATTTTCTTGGTCTTTGA 612 0.415 MGGGEHGYKKGFWNVDEDRVLMSYVKEHGMGKWNRIAKVTAGLKRSGKSCRLRWMNYLSPDVKRGGFSQDEEDLVIRLHKLLGNRWSLIAGRIPGRTDNQVKNYWNTHLSKKLGVNKGKSKFHASDPQTVPKEPKENSESIGEEEGEKHLQASSCGDMSFASIYEGIMTDDFETAFCFANTDQLNLQSPYFSESFLQEYFLGL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2645 203 MobiDBLite consensus disorder prediction 126 148 - -
Lja2g2645 203 CDD SANT 67 109 IPR001005 -
Lja2g2645 203 Gene3D - 66 141 - -
Lja2g2645 203 Gene3D - 10 63 - -
Lja2g2645 203 SUPERFAMILY Homeodomain-like 7 105 IPR009057 -
Lja2g2645 203 MobiDBLite consensus disorder prediction 118 148 - -
Lja2g2645 203 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Lja2g2645 203 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Lja2g2645 203 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lja2g2645 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Lja2g2645 203 PANTHER TRANSCRIPTION FACTOR WER-LIKE 3 161 - -
Lja2g2645 203 ProSiteProfiles Myb-like domain profile. 5 58 IPR001005 -
Lja2g2645 203 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 161 - -
Lja2g2645 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 58 IPR017930 -
Lja2g2645 203 SMART sant 63 111 IPR001005 -
Lja2g2645 203 SMART sant 9 60 IPR001005 -
Lja2g2645 203 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2645 Lja-Chr2 36822428 36823750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2645 3 125 MYB Transcription Factor Family AT5G40330 72.358 6.32e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g2645 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2645 K09422 - zju:107418407 223.787