Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2643 ATGGCGGGTGAGGTGCTGGTGGAGAAGCAGGAAGAACAATCTCTAAAGCTGAAAGTCACTAACAAAAGCCATGTGAAACCTGAGGAGAAAATTGGGAAAAAAGAGTACCAGCTGGTGACTTTTGACCTCCCTTACTTAGCTTTTTATTATAACCAGAAGCTCTTGTTTTACAAAGGGGAAGGGTTTGAGGGACTGGTTGAGAAACTGAAAGATGGGCTTGCTGTAGTTTTAAAGGAGTTTCATCAACTTGGTGGTAAGATTGGGAAAGATGAGGAGGGTGTGTTTAGGGTTGAATTTGATGATGATTTGCCTGGGGTTGAGGTCATTGAGGCTGTTGCTGATGAGGTTGCTGTGGCAGATCTCACTCTTACTGAGAGTAGCAGCATTTTGAAGGAGCTGATTCCTTACAGTGGTGTCTTGAACTTGGAAGGCATGCACAGGCCCTTGCTTGCAGTTCAGTTCACCAAGCTCAAAGATGGGCTTGCCATGGGCTTGGCGTTCAACCACGCTGTCCTAGACGGGACTTCCACGTGGCACTTCATGAGTTCATGGGCTGAGATCTGTTGCGGCGCACCCTTCCCATCAGTCCAGCCCTTCCAAGAGAGGACCAAGGCCCGAAACACGCGCATGAAGCTTGACCTCTCCTTACCTGAGCCCAAAAGCCCACCCCCTTCAGCCAATGGAGATGCGAAGCCGGAGCCCGTGCTTAGGGAAAAAATCTTTAAGTTCTCTGAGTCAGCCATTGACAAGATCAAGTCAACGGTCAATGAGGCCCCTCCATCGGATGTTTCAAAACCATTCTCAACATTCCAAGCTCTCTCCACTCACATTTGGCGCCACGTGACCCACGCGCGTAGCTTGAAGCCTGAAGACTACACGGTGTTCACCGTCTTCGTGGATTGCCGGAAACGGGTGGACCCACCAATGCCAGAGGCTTACTTCGGAAACCTTATCCAGGCCATATTCACCGTCACGGCGGTCGGGCTTTTGTCAGCCCACCCGCCGCAATTCGGCGCTACAATGATCCAAAAGGCCATTGAAGCCCATGATGCTAAAGCTATTGATGAACGCAACAAGGACTGGGAGAGTGCTCCCAAGATTTTTCAGTTCAAAGATGCTGGGATAAATTGTGTGACTGTAGGGAGTTCACCAAGGTTCAAGGTCTATGACATTGATTTTGGATGGGGGAAGCCCGAGATTGTGAGGAGTGGGCCTAACAATAAATTTGATGGGATGATTTATTTGTACCCAGGGAAGAGTGGAGGGAGGAGCATTGATGTGGAACTAACTTTGGAGCCCGAGGCTATGGGTAGGTTGGAGCAAGACAAGGAGTTTCTTATGGAGGTATAA 1350 0.4933 MAGEVLVEKQEEQSLKLKVTNKSHVKPEEKIGKKEYQLVTFDLPYLAFYYNQKLLFYKGEGFEGLVEKLKDGLAVVLKEFHQLGGKIGKDEEGVFRVEFDDDLPGVEVIEAVADEVAVADLTLTESSSILKELIPYSGVLNLEGMHRPLLAVQFTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEICCGAPFPSVQPFQERTKARNTRMKLDLSLPEPKSPPPSANGDAKPEPVLREKIFKFSESAIDKIKSTVNEAPPSDVSKPFSTFQALSTHIWRHVTHARSLKPEDYTVFTVFVDCRKRVDPPMPEAYFGNLIQAIFTVTAVGLLSAHPPQFGATMIQKAIEAHDAKAIDERNKDWESAPKIFQFKDAGINCVTVGSSPRFKVYDIDFGWGKPEIVRSGPNNKFDGMIYLYPGKSGGRSIDVELTLEPEAMGRLEQDKEFLMEV* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2643 449 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 19 445 - -
Lja2g2643 449 Gene3D - 15 215 IPR023213 -
Lja2g2643 449 Pfam Transferase family 16 445 - -
Lja2g2643 449 Gene3D - 219 442 IPR023213 -
Lja2g2643 449 MobiDBLite consensus disorder prediction 213 232 - -
Lja2g2643 449 PANTHER BAHD ACYLTRANSFERASE DCR-RELATED 19 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2643 Lja-Chr2 36745854 36749252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2643 15 449 Monolignol Biosynthesis Gene Families AT5G48930 26.039 2.90e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2643 K19747 - gmx:100790669 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2643 2 36745854 36749252 Lja2g2643 2 36745854 36749252 ECH