Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2634 ATGCTTGTTGCAAAGCACAACGGCTCTGGCGCTCCAGATGTCATGAAAACAGAAGAGAGAATAGATACCGATGCCATGATCAGAACAGATAATGCAATCAGACAGGTAGCGGGCACAGAACCTGTAATTTATTTTCCAAGGGCTGGTGTCAACCCTGTACAGTGGATTCAAGTACTTCATGCTTTAGATCAGCAAGGTGGTAGCAATTCATATTCAGAGCTTACAGGGTGGCCTTTGCTCTCTTCTCTGAGATGTCAGTTGCAGAAGTGTGACAAGTGTTCTCAAGAGTTCTGCTCCCCCGTTAACTATAGAAGACACATAAGTGTACATCATCGGTGGAGAAAGCTTGATAAGGATTCTACAAAAGTTAGGGATCTTTTAGGAGCTTATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTATCATTCGAAAATGTGATGCTGAAGGAGGTTCCAGGGTCTTCGATTTTAGAATCTTTGATGACTCTTGTTCAAAAACAAGGGTTTTCTTTACTTCCTCAGTATTATCTTAGGGCTGGTGCTGCCCTTTTGGATATTGTTCAATCTAAACCTTCCAGTTTTCCTATATCTTCCTTGGAGTTGTTCAGTATCCTTGACGATGCTAGTGAAAAAACATGTTTATGGGGGACAGCAGTGTCAATGCAAAAACATCTTCTTGATGGAGGGGCTGGAAAAATTGGTCTTGAACCGGAAAACGTAGTTGCTTGGACAAGTTTCTTGCTAGAACAGAAATTGGTGGAAGCATGGCTATCTGACAGGGATGCTGAAGCGCTGAGGTGCCAGAAGCAATTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGGCAGGCTGAGATATTGGAGAGGAAACGCCAGAAGAAGCGTAGACAAAAAGAACAGAAGGCTAGGGAGCGAAGACACAAGGATGTGGAAGAAATCAAAAAGAATATTGACAGTGCAGTAAAGGATTTATCACGAGCAGAAGCATCTTTGGATAGATACAATTCTGAAGGTCATGATCTAGATACATTTGCAGATAACAACACTCCTTTACATGTACCTTTCCAATGCTCTGACACTAATGAAGGAATAGATGAGATAACTCAGTCACGGCATGATTTTGGCTCTGATCAGAATATTGAGAGACAGTCAGCACGTGGGCATAACCATCGGCGCTCAGCAGTTGCCAGATGGCAGGAGCCACCTAAACTACAGTGGGCTGTAGCCAATGGTTTGCATAAAAACCTGCACACTCCAATTTCAAAAAATGAAGTCAATACACAAAAAGGAATCGGACGTGATCAAAAGGCAGCAGCTACAGTTAATGGTAGTAAGGCATGGAGTCAAAAGCCTAAATCTGAAATTGACAGGGTGGTTTTAAAAACCAAAGCAGAGAAAGAACCAGACCTTGTTAAGAACCATGTAGTTTTGATAGGATCTATATCAGTTAATCTTGGTAATTGTAGAAAATCAGAGGGTAATGTGGTGGAATCTCAAGAGGACTGCATGGTTAAGAATGTGGCTGAGCAGAATAGTTCTCAGGATAAACCAATGGAACCTGATTTGGTCGTGACTGGAAACAATCAATTAAAAGTTAGACATTGGAGACCGGTTATTCAGCTTGAAACTAAAGATACATTGCCAGTTCAAAATGGTGGGACAGGAGTTGATGTGGTTCACGGAAATGGAGACTGTCGAAACTTGTCAGGTCCTACAAGTTTTGAAAACAATAACTCCCATCCAGAGGGTAGAGTGAATCGGGGAAGCTTGCAGTCATCCATCCATGAAGCAAAAGCCTTTCTTGCTCAAAGATGGAAAGAAGCTCTCTTATCAAATCATGTGAAATTAGTTGTTTCCCCTGACTCAAAATCGCCTAGGTGCCAGGAGATTCAGCATTCGAACATAGCAGCATGTAACTCTTCTGATGAAAGATGCAACATTATTGCGAATGCAGACAACAGGTTGCCTGCAACCTCCAGAGTTTCTAGATCCAAGCACAGAAAGAAGTCTGAAAACGGAAACAAGACAAAGTATATTCCCAAACAGAGAAGTGCTACCTAA 2064 0.4225 MLVAKHNGSGAPDVMKTEERIDTDAMIRTDNAIRQVAGTEPVIYFPRAGVNPVQWIQVLHALDQQGGSNSYSELTGWPLLSSLRCQLQKCDKCSQEFCSPVNYRRHISVHHRWRKLDKDSTKVRDLLGAYWDKLSVEEAKEVVSFENVMLKEVPGSSILESLMTLVQKQGFSLLPQYYLRAGAALLDIVQSKPSSFPISSLELFSILDDASEKTCLWGTAVSMQKHLLDGGAGKIGLEPENVVAWTSFLLEQKLVEAWLSDRDAEALRCQKQLVEEEEAAQKRQAEILERKRQKKRRQKEQKARERRHKDVEEIKKNIDSAVKDLSRAEASLDRYNSEGHDLDTFADNNTPLHVPFQCSDTNEGIDEITQSRHDFGSDQNIERQSARGHNHRRSAVARWQEPPKLQWAVANGLHKNLHTPISKNEVNTQKGIGRDQKAAATVNGSKAWSQKPKSEIDRVVLKTKAEKEPDLVKNHVVLIGSISVNLGNCRKSEGNVVESQEDCMVKNVAEQNSSQDKPMEPDLVVTGNNQLKVRHWRPVIQLETKDTLPVQNGGTGVDVVHGNGDCRNLSGPTSFENNNSHPEGRVNRGSLQSSIHEAKAFLAQRWKEALLSNHVKLVVSPDSKSPRCQEIQHSNIAACNSSDERCNIIANADNRLPATSRVSRSKHRKKSENGNKTKYIPKQRSAT* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2634 687 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Lja2g2634 687 MobiDBLite consensus disorder prediction 570 590 - -
Lja2g2634 687 MobiDBLite consensus disorder prediction 288 312 - -
Lja2g2634 687 Coils Coil 264 308 - -
Lja2g2634 687 MobiDBLite consensus disorder prediction 657 687 - -
Lja2g2634 687 Coils Coil 311 338 - -
Lja2g2634 687 ProSitePatterns Zinc finger C2H2 type domain signature. 90 111 IPR013087 -
Lja2g2634 687 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2634 Lja-Chr2 36385157 36390501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2634 19 684 C2H2 Transcription Factor Family AT4G25610 40.296 2.23e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g2634 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2634 - - gmx:100809067 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2634 2 36385157 36390501 Lja2g2634 2 36385157 36390501 ECH
Lja2g2634 2 36385157 36390501 Lja5g0648 5 5820824 5827932 PCT