Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2628 ATGGCACCGAAGCAGCCAAGCACTGGTCTTTTTGTTGGGTTGAATAAGGGTCACGTTGTCACCAAGAAGGAGTTGGCTCCACGCCCCTCTGATCGCAAAGGGAAAACAAGCAAAAGGGTGCACTTTGTAAGGAGCCTCATCCGTGAAGTTGCTGGGTTTGCACCTTATGAGAAGCGTATAACTGAGTTGCTGAAGGTTGGAAAAGATAAGAGGGCACTTAAAGTTGCCAAGAGAAAGCTCGGAACTCACAAACGCGCAAAGCGAAAGCGTGAGGAGATGTCCAATGTTCTCCGAAAGATGAGGGCTGGTGGAGCTGGTGATAAGAAGAAGTAA 333 0.4865 MAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAGGAGDKKK* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2628 110 MobiDBLite consensus disorder prediction 87 110 - -
Lja2g2628 110 Gene3D 60S ribosomal protein L36 1 108 IPR038097 -
Lja2g2628 110 MobiDBLite consensus disorder prediction 1 37 - -
Lja2g2628 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 - -
Lja2g2628 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Lja2g2628 110 MobiDBLite consensus disorder prediction 79 110 - -
Lja2g2628 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
Lja2g2628 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2628 Lja-Chr2 36264775 36266335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2628 1 110 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 80.909 4.45e-58 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2628 K02920 - zju:107414508 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2628 2 36264775 36266335 Lja5g0643 5 5785893 5787686 ECH
Lja2g2628 2 36264775 36266335 Lja2g2628 2 36264775 36266335 ECH