Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2625 ATGCCAGAATCAGAGGAAGAAAACCCTGACCTTCCTCTCAAGTCAAAGCCAATGGAGGAACATGGGTTTCCCATGGACTTTGATAATGACCTTGAAAGTTCATGGCCTTTTGATCATGTATCTTGTCTCTCTAACCCCATGTCTCCTTTTCTCTTATCCAACATCTCTGAACAACCTTTTTCTCCTCTCTGGGCTTTTTCTGATGTTGAAGATGACAAGCATGTCAGCATTACTGCTTCAGATACAGTAACTGAGAATCCAGTTGAAAATGATGACAGCAAAAAGCATATGACACCCCTTGTACCTATGCCACCATTGGAAAATCGAGATGGTTTTTGTCTTATCAAGGAAAGAATGACACAAGCTCTTCGCCACTTCAAAGAGTTAACTGAACAGAATGTTCTGGCTCAGGTTTGGGTACCTGTGAGGAATGGGAATAAGTATAAACTCACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGTGTCCCTGATGTACATGTTTTCTGTGGATGGAGAAAATGATGAAATTCTGGGGCTTCCGGGTCGAGTTTTTCAGCAGAAATTGCCAGAATGGACTCCAAATGTTCAGTATTATTCTAGTAAAGAGTATTCGCGCTTAAATCATGCTCAACACTACAATGTTCGCGGAACCTTGGCTCTTCCTGTGTTTGAACCTTCAGGGCAGTCATGTGTTGCTGTGATGGAATTGATAATGACTGCACAGAAGGTTAACTATGCTCCAGAGGTTGATAAAGTTTGCAAAGCCCTTGAGGCAGTAAATCTGAGGAGTTCAGAAATTTTGGAGCATCCATACAGTCAGATTTGTAATGAAGGCCGCAAGAATGCATTAGCAGAGATTTTGGAGATATTGACATTGGTGTGTGAAACTCACAATTTACCTTTAGCACAAACATGGGTTCCCTGTAGGTACCGGAGTGTCTTGGCCCACGGTGGCGGTCTCAAGAAAAGTTGCTCTAGCTTTGATGGCTATTGCATGGGGCAAGTTTGCATGTCTATAACTGAGGTAGCATACTACATCATAGATTCTCACACATGGGGCTTTCATGAAGCTTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCAGAACATGTGCTTCTGTGGGAACATTACTCAATTCTGCAAAACTGATTACCCTTTGGTGCATTATGCTCTCATGTTTGGGTTAACAAGCTCTTTTGCAATCTGTTTACAAAGCTCTCATACTGGAAATGATGATTATGTGTTAGAGTTTTTTCTGCCTCCCAGGATCACAGAATTCAATGAACAAAAAGCTTTGCTGGGGTCCATATTGGCAACAATGAAGCAACACTTCCAGAGTCTCAAGATTGCTTCTGGTGTTGAACTTGAGGAGGATGGTTCAGTTGAGATTGTGGAAACGATAAATGAAAGAGTTCATATGAGGCTAGAATCTGTTCCAATTATCCAATCTGATAAATCACCCCCTAGACATGATGGTTCAGCTTCACCAAATTTGAGGCATGGGGTGCCACTAGATCCATTAGAACAACAAACAATGTTGGATGGCATAAATGATGGAGGAAGTCTTGGCGATAGTGGAGGTGGAAGCATGGAAAAGATCTCTTCTTTAGAGATAAAAAATAAAACCTCACAGAGAAAACGTGGAAAAGCTGAGAAATCAATTAGTCTGGAAGTTTTGCAACGTTATTTCAGTGGGAGCCTTAAGGATGCTGCAAAAAGCCTTGGTGTTTGTCCTACTACAATGAAGCGCATATGCAGGCTAAATGGGATATCTCGCTGGCCATCTCGAAAGATAAAAAAGGTTAATAGTTCCCTATCCAAGCTCAAGTGTGTTATGGAATCAGTCCATGGTGCTGAAGGAGCATTTGGTCTGAATTCTCCAAGTAGTTCACTTCCCATCGCTTCTGCTGAGCCTTGTACTTCAAAAAAGTTGGACCACCAGGCCCCATTACGCATTAGGCCATCAGAATCTAGGATGAATTGGAAATGA 2049 0.4207 MPESEEENPDLPLKSKPMEEHGFPMDFDNDLESSWPFDHVSCLSNPMSPFLLSNISEQPFSPLWAFSDVEDDKHVSITASDTVTENPVENDDSKKHMTPLVPMPPLENRDGFCLIKERMTQALRHFKELTEQNVLAQVWVPVRNGNKYKLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEILGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHAQHYNVRGTLALPVFEPSGQSCVAVMELIMTAQKVNYAPEVDKVCKALEAVNLRSSEILEHPYSQICNEGRKNALAEILEILTLVCETHNLPLAQTWVPCRYRSVLAHGGGLKKSCSSFDGYCMGQVCMSITEVAYYIIDSHTWGFHEACVEHHLQQGQGVAGRAFLSQNMCFCGNITQFCKTDYPLVHYALMFGLTSSFAICLQSSHTGNDDYVLEFFLPPRITEFNEQKALLGSILATMKQHFQSLKIASGVELEEDGSVEIVETINERVHMRLESVPIIQSDKSPPRHDGSASPNLRHGVPLDPLEQQTMLDGINDGGSLGDSGGGSMEKISSLEIKNKTSQRKRGKAEKSISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRLNGISRWPSRKIKKVNSSLSKLKCVMESVHGAEGAFGLNSPSSSLPIASAEPCTSKKLDHQAPLRIRPSESRMNWK* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2625 682 MobiDBLite consensus disorder prediction 655 682 - -
Lja2g2625 682 MobiDBLite consensus disorder prediction 499 551 - -
Lja2g2625 682 PANTHER PROTEIN NLP8 3 680 IPR045012 GO:0003700
Lja2g2625 682 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 680 - -
Lja2g2625 682 Pfam RWP-RK domain 573 621 IPR003035 -
Lja2g2625 682 MobiDBLite consensus disorder prediction 83 102 - -
Lja2g2625 682 MobiDBLite consensus disorder prediction 7 22 - -
Lja2g2625 682 ProSiteProfiles RWP-RK domain profile. 558 641 IPR003035 -
Lja2g2625 682 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2625 Lja-Chr2 36032049 36038708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2625 170 648 NLP Transcription Factor Family AT1G64530 64.198 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja2g2625 RWP-RK 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2625 - - lja:Lj2g3v0381780.2 1375.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2625 2 36032049 36038708 Lja5g0641 5 5770856 5775350 PCT