Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2622 ATGTCAACCTCCAGAAGGAAAAGTCTCGGAAGGCAAAAAATTGAAATGAAAAAAATGACAAATGAAAGCAACCTCCAAGTCACTTTCTCAAAGCGTCGTAGTGGACTCTTTAAGAAAGCCAGCGAGCTATGCATCCTATGCGACGTGGAGATTGCTCTTGTTGTCTTCTCGCCAGGTGAAAAGGTATTCTCTTTTGGCCACCCAAGTGTTGAGGCCGTCATCAAGCGCTACTTCTCTCAAGCACCACCCCAAACCTCTGATACCATGCAGTACATTGAGGCTCAACGCAACTCCAAGGTGCATGAGCTCAACGTGGAGCTCTCTCAAATCAACAACCTATTGGACACCGTGAGGAATCACGGTGAGGAGCTGAATCGCCTACACAAGGCGGCACAAGCTCAGTTTTGGTGGGCTTGTCAGATTGAAGAGATGGATAGGCCTAAGCTTGAGCAATTTAGGATGGCCTTGAATGAGCTTAAGAAACAGATCAGTCGCTATTGTGACAGGACTCGCATTCATGGTGCTCCCGCTGCTAGTACTGCCACTACTAACCCACCAACTCATATGTTTTTTGCTTCTGGTTCGTCCAATGTCATGATCCCTCCCCACCACCCACAATCACCTCCTCCTCAGGTGTTTGCACCACAGTTTTTTGAGGGCTCCATGAAGCAGGGCCATCATTTGTTTGGTGGAATATTTAACAACATGGGAGCATACGATGGACCCCCTGGCTTCTACTAA 741 0.4777 MSTSRRKSLGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCILCDVEIALVVFSPGEKVFSFGHPSVEAVIKRYFSQAPPQTSDTMQYIEAQRNSKVHELNVELSQINNLLDTVRNHGEELNRLHKAAQAQFWWACQIEEMDRPKLEQFRMALNELKKQISRYCDRTRIHGAPAASTATTNPPTHMFFASGSSNVMIPPHHPQSPPPQVFAPQFFEGSMKQGHHLFGGIFNNMGAYDGPPGFY* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2622 246 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lja2g2622 246 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Lja2g2622 246 Gene3D - 21 89 IPR036879 GO:0003677|GO:0046983
Lja2g2622 246 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lja2g2622 246 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lja2g2622 246 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lja2g2622 246 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lja2g2622 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Lja2g2622 246 SUPERFAMILY SRF-like 10 92 IPR036879 GO:0003677|GO:0046983
Lja2g2622 246 Coils Coil 149 169 - -
Lja2g2622 246 PANTHER MADS BOX PROTEIN 8 176 - -
Lja2g2622 246 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 176 - -
Lja2g2622 246 Gene3D - 90 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2622 Lja-Chr2 35993474 35994487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2622 6 169 Type I MADS-box Gene Family AT5G60440 52.096 5.02e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja2g2622 SRF-TF 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2622 - - lja:Lj2g3v0391820.1 323.168