Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2612 ATGAATGATTCTGAAGAAGATAATTGGCTTAATCCGTTTGATGACGACCTTTGTATCATCGATGAGGATGAAAGTCTGAATTCTAACCCTGTCAACGATCCTGAGAACGATGGGAATGAGGATGAAAATTGTTTGAAGGAGGATGAAAATGGTTTGAAGGAGGGTGAGAATCTGATTGATGTGAATGTAGGGGATAATGAAGGTGGAAATTTTGTGGATGTCGATGAGATGATTGAGACTGTACAGGACAGTCAAAAGGACTCTGATATAGATGTTAAAGTCATGAAAAGGATTACTGAATTGTCTGCAGACGACATTAGAGAGTTGGATTTTTGTTCTGAGGAGGAAGCATGTGAATTCTATTCCAAATATGCTCGTTTCCGTGGATTCTCTCCAAGAAAAGATGATGTTTACAAGGATTCTGATGGCAATATTATCTCACGTCAGATAGTGTGCAATAGGGCTGGTCAAAGGCATCAGAAGCATATGCATAATGGTGGTAGAACAAAACAACCTAAGCCTATTACTAGACCTGTTATCACAACTGCACTTAGTGGCATTGAGTATGGAGCTGCCAAAATATTAACCGGGGATATGTTCTGGGAAGTTAAGAGTCAAATTGAAGATGCTCTAGGGATAAATGTGGAGCGTGAGGAGGTGTCCAATATTGTGATGATGAAAATGAGAAAAATTAGTAATCACATAAAAGAATATATTGTGGTTTATGATAAGAACCAGAAAAAGTTTGTCTGTGATTGTGGTTATTATGAGTATTTTTTTATTCCTTGTTCTCACATAATAGCTGGGATGAGAAGTGAGTATATTGATGAATTTCCAACCAATCTAGTTTCTAAGAGGTGGTTGAAATCAGCCAAGTCTGCTCATGTGTATTCAATTACAGAGCCTAGTATTCAATCACAGAATTTGAAATTGTTGCGAAAAGGAGCTATGGATGTTCAGAAGAGTCGCAAACCGGGTTGTACATCAAACAGTGCAGCCTTTGATGTGGGTGATCCAATTGTTGTACCGGCTAGAGGTGCCCCCAAGAAGAACAAAACTGGCACCAAGAGAAGGCAGTGCTCAAATTGCAGGGGTATTGGACGCACGATTCGTACGTGTCCGGCTTTGCTTTATTCTGATCAAGTCCCTAATACTGAAGGAGGTGAATCTGCAACTGAAGGAAATGAGGACAGCACACACGACGAGGTGATTAGTGATTGGTGCTTACAATCTGTGCAGAATTTGCGTTCAAATCAGAACCCGGGGTCGAGAAAACAAAATAAGCGTAAGTCTCAGCAGCGAGAAGTCCCAGTCATGATACATTCAAGCCAAGTATCTGGGAATGAATTGACTCAGAGTTCACCGAATAATGCAGGTCGCGGTGATGTGGATAACAACAGAGTTACTTTGTTGCCCCAGCATCCACAGGAAATACCTTTGACCCAAGCATCTGTGAATCAGGTACAGGTTTATAACATGGAGCCTATTGTACAACAAGTCCACTATCCTGTTGTTCGTGCTTCAGCTGGACTTCCATTTTTGCAACCTACTTATGCCGTGAATATGACTGATGGAGTTCAGGTGTTTCCACAGTTTATACAGCACCAAAACGTCCAGGTTCCTTACCAAGGAGTTCAGATGCAAACGCTTTTTCAAGCTGGACCTTCTGGCTTACTCCCGACATTCTCATCGACGTTGGCGGCAGTCGATAGGAGACACAATAGAAATTCAAGTTTAGGAAATAATTGA 1749 0.4122 MNDSEEDNWLNPFDDDLCIIDEDESLNSNPVNDPENDGNEDENCLKEDENGLKEGENLIDVNVGDNEGGNFVDVDEMIETVQDSQKDSDIDVKVMKRITELSADDIRELDFCSEEEACEFYSKYARFRGFSPRKDDVYKDSDGNIISRQIVCNRAGQRHQKHMHNGGRTKQPKPITRPVITTALSGIEYGAAKILTGDMFWEVKSQIEDALGINVEREEVSNIVMMKMRKISNHIKEYIVVYDKNQKKFVCDCGYYEYFFIPCSHIIAGMRSEYIDEFPTNLVSKRWLKSAKSAHVYSITEPSIQSQNLKLLRKGAMDVQKSRKPGCTSNSAAFDVGDPIVVPARGAPKKNKTGTKRRQCSNCRGIGRTIRTCPALLYSDQVPNTEGGESATEGNEDSTHDEVISDWCLQSVQNLRSNQNPGSRKQNKRKSQQREVPVMIHSSQVSGNELTQSSPNNAGRGDVDNNRVTLLPQHPQEIPLTQASVNQVQVYNMEPIVQQVHYPVVRASAGLPFLQPTYAVNMTDGVQVFPQFIQHQNVQVPYQGVQMQTLFQAGPSGLLPTFSSTLAAVDRRHNRNSSLGNN* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2612 582 MobiDBLite consensus disorder prediction 1 46 - -
Lja2g2612 582 MobiDBLite consensus disorder prediction 416 463 - -
Lja2g2612 582 MobiDBLite consensus disorder prediction 378 400 - -
Lja2g2612 582 ProSiteProfiles Zinc finger SWIM-type profile. 238 274 IPR007527 GO:0008270
Lja2g2612 582 MobiDBLite consensus disorder prediction 436 463 - -
Lja2g2612 582 Pfam FAR1 DNA-binding domain 119 177 IPR004330 -
Lja2g2612 582 MobiDBLite consensus disorder prediction 1 22 - -
Lja2g2612 582 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 27 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2612 Lja-Chr2 35598657 35602051 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja2g2612 FAR1 1.9e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2612 - - lja:Lj3g3v0948310.1 275.018