Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2604 ATGGGAAATGAACAAATAGTACCTGATAAATATCATAATGAAGTTCCATCAGATGTTATGGTGAACAACAATAACATTGACGCACAACACCATGAAAGGGTTGAAACAAATGAATCTTTGGTGGAGAGAAGATGTAGCTTACGACTTAAAAACAAGTCCATTAGTGATAAGAGTGAGTCAATATTGAGCGGTGATGCTGATGATAAGAGAACCAAGCTCAATCCCATCTTACAACAACAAACATTGGATAAAGCATGGGTAGCTTGTGGAGATAGTGATGCTTCAAGTTCGATTGGTACAAGTTTATTTGTTTTTGATGAGCTAGATTTGAATGGCATCTTAATAATAAGAGAATCGCTGAGGCTTGCCAATAGATCAAGACTTAAATCGAGCAAGGTTGATAAAAATTTGAATCCTAAGAAATGTGCTCCTAGCATTCCCGCATCTAAGTATTTTTTAAAGAAGCTACGAAGACTAGCTAAATTGGGTACAGATAAGGTCCATTATGCACAAGGGAAAATATCGAGAGAATTTTTTGATTCTCCAATTTTGGCTTGTAAGGACCTCAGCGGTGGACAAGAAGCTATTCCCATTATTGCGACCAATATGTATGATAATCCTCTGGTGGTACCTACTGGTTTTAAATATATCAAATCTATTCAAGTTGCACGCAATGTGGAAGTTCCACCCTTTGTTGGTAGATGCAATTGCATAGGAAGTTGTATGAGTTGTTCTTGTGCTGGCCTTAATGGTACTGAGTTTCCATACACTCTTCAGAATGGTGGCAGGTTGATTGGGGCAAGAGATATCTTATATGAATGTGGGCCAAATTGTGGCTGTGGACCTGATTGCCGCAATCGAATTTCTCAAAAGGGTTTAAAGTATCGATTTGAGGTCTATCGTACACTTACCAAAGGGTGGGCCGTTAAGACATGGGACTTCATTCCCTCTGGTTCACCTGTTGTGGAATATGTTGGTGTGCTTAGTAAAATTGAAGACTTGGATCCTGATTCAACAGATACATATGTTTTTGAAATTGATTGTTTGCAAACAATCAATGAGCTAAAGGGCAAAAAGAGACGGCTAGGTAGTGTATCACTACCTGCAAGTATTTGTGCTAACAAAAATGACAATGATGACACCACGAAGAATGTTCCTGAGTTCTGCATAGACGCTGGCTCTTTGGGTAATGTTGCTAGGTTTATCAACCATAGTTGCAAGCCAAACCTTTTTGTGCAGTGTGTCCTAAGCTCCTACAATGATATCAGACTTGCTCGGATTGTACTATTTGCTAGTGAGAACATAAGGCCTTATCAGGAACTCACATGTGACTATAATTATAAACTTGATAGTGTTATTGGTCCGGATGGAAAAATCAAGAAGTTAGCATGTCACTGTGGTGCAAAAAAATGTCGTAAGCGCTTGTACTAG 1431 0.3885 MGNEQIVPDKYHNEVPSDVMVNNNNIDAQHHERVETNESLVERRCSLRLKNKSISDKSESILSGDADDKRTKLNPILQQQTLDKAWVACGDSDASSSIGTSLFVFDELDLNGILIIRESLRLANRSRLKSSKVDKNLNPKKCAPSIPASKYFLKKLRRLAKLGTDKVHYAQGKISREFFDSPILACKDLSGGQEAIPIIATNMYDNPLVVPTGFKYIKSIQVARNVEVPPFVGRCNCIGSCMSCSCAGLNGTEFPYTLQNGGRLIGARDILYECGPNCGCGPDCRNRISQKGLKYRFEVYRTLTKGWAVKTWDFIPSGSPVVEYVGVLSKIEDLDPDSTDTYVFEIDCLQTINELKGKKRRLGSVSLPASICANKNDNDDTTKNVPEFCIDAGSLGNVARFINHSCKPNLFVQCVLSSYNDIRLARIVLFASENIRPYQELTCDYNYKLDSVIGPDGKIKKLACHCGAKKCRKRLY* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2604 476 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 148 475 - -
Lja2g2604 476 Pfam Pre-SET motif 190 287 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g2604 476 SMART preset_2 186 279 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g2604 476 ProSiteProfiles SET domain profile. 295 446 IPR001214 GO:0005515
Lja2g2604 476 Pfam SET domain 306 446 IPR001214 GO:0005515
Lja2g2604 476 SUPERFAMILY SET domain 178 454 IPR046341 -
Lja2g2604 476 SMART set_7 295 452 IPR001214 GO:0005515
Lja2g2604 476 ProSiteProfiles Post-SET domain profile. 460 476 IPR003616 -
Lja2g2604 476 Gene3D SET domain 180 476 IPR046341 -
Lja2g2604 476 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 148 475 - -
Lja2g2604 476 SMART PostSET_3 460 476 IPR003616 -
Lja2g2604 476 ProSiteProfiles Pre-SET domain profile. 233 292 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2604 Lja-Chr2 35427808 35432651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2604 132 476 EF-hand Containing Proteins AT5G13960 53.868 6.12e-126 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja2g2604 SET 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2604 K11420 - lja:Lj0g3v0265609.1 540.806