Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2595 ATGGGAAAAGCACCATGTTGTGATAAAAATGGAGTGAGGAGGGGAGCTTGGACTCCTGAAGAAGATAAAGCTTTGGTTGACTACATTAACAAGCATGGCCAGGGAAGTTGGCGTACACTTCCCATGCAAGCAGGTCTCCTTCGATGTGGGAAAAGTTGCCGGCTTCGGTGGATAAATTATCTTCGCCCTGACATAAAGCGTGGACCATTTACTAGTGACGAAGAAAGTAAAATTATTCAGCTTCATGCCATGCTTGGCAACAGGTGGGCTGCTATAGCAACTCAACTCCCAGGAAGAACAGACAATGAAATCAAGAACTACTGGAACACCCAGCTGAAGAAGCGCCTTCCTCGGTCGGGATATTCCCCAGGGACACAACAAACACAACAACAACAACATCACTCTTTCAGCCCTGATCACAGCGTTGTGAAATCCGAGTCTCCTTCGACGCGCCACATGGTGCAATGGGAAAAGACCAGAGTTGAGGCAGAGGTAAGATTATCAATGGAATCAGCAATGGTTAATTCTCTGTCAGCAACTGAAACATCAGTATACACAGATTACTTTCTTCAACTTTGGCATTCTGAGGTTGGAAACTCCTTCCGCATGATCAAAGGAAAAGAAGGAGTTGTAGTGTGTCCGAGCTCTGTCTCACAGGCATCATCATCCTCAAAATTGGAGTCATGTTCAGAAGCATCATTGCCGGTTAAAAACACTGCCTTGGCAAACAAGTCACAAGAACAAGGTAGTAGCTATAAGCTAAATCTTGAAGATGGCACTGCAGATTCAGAGTCTGGCTACTATGAATTTCATGATGCTACTACTGATTCTGAAGAATTAAAGCACCTGCTAGATATGCCTGATGGTGAAGTAGGCTTCATAGGGGAGAATGACAATTACCTCAATACTCTTTATGGTTAG 921 0.4441 MGKAPCCDKNGVRRGAWTPEEDKALVDYINKHGQGSWRTLPMQAGLLRCGKSCRLRWINYLRPDIKRGPFTSDEESKIIQLHAMLGNRWAAIATQLPGRTDNEIKNYWNTQLKKRLPRSGYSPGTQQTQQQQHHSFSPDHSVVKSESPSTRHMVQWEKTRVEAEVRLSMESAMVNSLSATETSVYTDYFLQLWHSEVGNSFRMIKGKEGVVVCPSSVSQASSSSKLESCSEASLPVKNTALANKSQEQGSSYKLNLEDGTADSESGYYEFHDATTDSEELKHLLDMPDGEVGFIGENDNYLNTLYG* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2595 306 MobiDBLite consensus disorder prediction 115 150 - -
Lja2g2595 306 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja2g2595 306 SMART sant 13 63 IPR001005 -
Lja2g2595 306 SMART sant 66 114 IPR001005 -
Lja2g2595 306 CDD SANT 69 110 IPR001005 -
Lja2g2595 306 CDD SANT 16 61 IPR001005 -
Lja2g2595 306 Gene3D - 14 66 - -
Lja2g2595 306 MobiDBLite consensus disorder prediction 115 153 - -
Lja2g2595 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja2g2595 306 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja2g2595 306 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja2g2595 306 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja2g2595 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja2g2595 306 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja2g2595 306 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 295 - -
Lja2g2595 306 Gene3D - 68 141 - -
Lja2g2595 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2595 Lja-Chr2 35191272 35194950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2595 1 300 MYB Transcription Factor Family AT3G61250 50.649 6.02e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g2595 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2595 K09422 - gmx:100807142 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2595 2 35191272 35194950 Lja5g0618 5 5545746 5557175 ECH
Lja2g2595 2 35191272 35194950 Lja2g2595 2 35191272 35194950 ECH