Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2590 ATGGACAATCAACGAGTACGAGACTTCATGATCAACAAGTTACCACCGGGTTTCAAATTCAACCCTGATGATATTGAATTAATCCAGTATTATCTGAAGCCCAAGATAGCTGGTGATCCGATTCTAGTTCCTCGTCGAATTCATGATATTGATATTTACAAGCATTCTCCATATGAACTAGAAACATATAAGTACAGAGGAGAGAAGTATATATACTTCTTTACTCCAAGAAACAAGAAATATCGAAACGGAACGCGTCCTGATCGTGCTACTGGGGACTTTGGTTATTGGAAAGCTACTGGAAAAGAAGAATCAATAAGAACAAATAATGGCAATATTGTGATTGGATCTAAAAGGAATTTAGTTTATATGGAAGGAAATCCTAACAGATCCAAAGAAAGAAAAGGAGAAGAGCTTAGTGCTGTGAAAACAAATTGGATGATGCAAGAATACACAATTAATAAAGAGATCAATGATTCTGCGATTTCAAAGGCGACATCTCCATTGTCTGAGATGCATTTGGACGATTGGGTTCTATGCAAGATTTACAAGAACGATCGTGAGAATTATCCACAAAAACGGAAACATCAAGAAGTCGAAGAATTGAATACATTGTAA 618 0.3608 MDNQRVRDFMINKLPPGFKFNPDDIELIQYYLKPKIAGDPILVPRRIHDIDIYKHSPYELETYKYRGEKYIYFFTPRNKKYRNGTRPDRATGDFGYWKATGKEESIRTNNGNIVIGSKRNLVYMEGNPNRSKERKGEELSAVKTNWMMQEYTINKEINDSAISKATSPLSEMHLDDWVLCKIYKNDRENYPQKRKHQEVEELNTL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2590 205 ProSiteProfiles NAC domain profile. 14 185 IPR003441 GO:0003677|GO:0006355
Lja2g2590 205 SUPERFAMILY NAC domain 10 184 IPR036093 GO:0003677|GO:0006355
Lja2g2590 205 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102-LIKE 8 197 - -
Lja2g2590 205 PANTHER NAC TRANSCRIPTION FACTOR 56 8 197 - -
Lja2g2590 205 Pfam No apical meristem (NAM) protein 15 152 IPR003441 GO:0003677|GO:0006355
Lja2g2590 205 Gene3D NAC domain 24 190 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2590 Lja-Chr2 35056399 35057229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2590 12 184 NAC Transcription Factor Family AT3G04070 44.318 3.19e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g2590 NAM 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2590 - - rcn:121049231 169.474