Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2586 ATGTTTGAGTTTCAACCCAATTACTTCTTCTTCACTTCCTTCCCATACCTTCAAATCCTCCTATTCCTACACCATGTTGATGCACAAGCATCCATGGAGCCAGTACCCACATACATCACTGAACATAACTGGGAGCCTTCTATTGCAATCACAGTAGGAGCCATCCTCTGCGCCCTTCTCTTCATGGGAATCATTGCAATCTACTTCCGCAATTGCGCCGAGTCACGATTCCTCATGGCTCAAACCAACGCACTAGCTAACAGGTCATGTTCCTGTTCACAAGGCATCAACAAGGACCTCCTCAGCACGTTCCCAACCATATTCTACTACACCATCAAGGACCTCAAAACCGGTAAAGGATCGCTCGAATGCGCGGTCTGCTTGACGGATTTCAAAGACGATGACACGCTCAGGTTGCTGCCCAAATGCAGCCATGTTTTCCACCCTCAATGCATTGATTCATGGCTAGCTTCTCATGTGACATGCCCTGTTTGCCGTGCAAATCTTAACCAAGATGCTTGCCAAGTTGCCATAACTGTGCCAACCCATTTGAGCAATGATCAAATGGGTGCCGAAGCTGCAGAAAACAGAGCTGAAACTCATGGAGATGAAGGGCACCAAGTGGAGCCAAATCCAAACCCAAAACCAGTTCCAGTTGTTCATAACATGAAAGCAACTGAGGAGGGTAATAGTGATGATGGGGTTGCGTCAAAACCGAAACTTTTGAGGTCAAATTCAACGGGTCATTTGCAAGTTGAGCCAGTGAAGTGTGTAGAGAGATACACACTGAGGTTACCAGAGGATGTGAGGAGGTACATTCTGGTGAACCATGACAAAAGGTTTCAGCGTTCAGCTAGCTGCTACAACAGCAATATCAACATCAACAACAATGAAGGGAGCAATGTTGGGAAGAGTGTCAATGGCGAAGAGAGGATGGAGCGGTGGGTGATTTGCACGCCGCCATTTGTTGCGTCGCGCCGTGGTTGA 987 0.4752 MFEFQPNYFFFTSFPYLQILLFLHHVDAQASMEPVPTYITEHNWEPSIAITVGAILCALLFMGIIAIYFRNCAESRFLMAQTNALANRSCSCSQGINKDLLSTFPTIFYYTIKDLKTGKGSLECAVCLTDFKDDDTLRLLPKCSHVFHPQCIDSWLASHVTCPVCRANLNQDACQVAITVPTHLSNDQMGAEAAENRAETHGDEGHQVEPNPNPKPVPVVHNMKATEEGNSDDGVASKPKLLRSNSTGHLQVEPVKCVERYTLRLPEDVRRYILVNHDKRFQRSASCYNSNININNNEGSNVGKSVNGEERMERWVICTPPFVASRRG* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2586 328 CDD RING-H2_EL5_like 123 166 - -
Lja2g2586 328 MobiDBLite consensus disorder prediction 194 208 - -
Lja2g2586 328 Pfam Ring finger domain 123 166 IPR001841 -
Lja2g2586 328 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Lja2g2586 328 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 226 296 - -
Lja2g2586 328 MobiDBLite consensus disorder prediction 186 217 - -
Lja2g2586 328 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 191 - -
Lja2g2586 328 SUPERFAMILY RING/U-box 123 172 - -
Lja2g2586 328 PANTHER RING FINGER DOMAIN-CONTAINING 3 191 - -
Lja2g2586 328 PANTHER RING FINGER DOMAIN-CONTAINING 226 296 - -
Lja2g2586 328 SMART ring_2 124 165 IPR001841 -
Lja2g2586 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2586 Lja-Chr2 34990743 34992436 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2586 7 327 Rapid Response to Elicitors AT3G05200 37.278 9.10e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2586 K10664 - gmx:100782532 322.013