Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2584 ATGATGATTTCGCAGACCAAACAGTACACCCACCTGACACTGTTCTTCTTCCTCGTGGCACTTTTCCACGCCACACACGCTCGACCAGATCCTCAACCACCTGTGGTGGCTCCACCACGCGCTTCGAACGAACATGCCAATAACTCAACGCTTATCATGCTTTTCGTGTTCTTCGTCTTCTCCGTCTTCATAACTGCCTTCTACTCCTTCTACGTTCGCCACTGTTCCGAACGGTACGTCTTTGAGCTCAGAAACAAAGGCGTTGAGCCGGAAGTGCTCGCCACGTGCCCAATCGTGTCCTACTCCGCCGCCAAAGCTGGAAACCGCCGCCCTGTGGCGGCGGAGTGTGCGGTGTGCCTGGGCGAGTTCGAGGGTCCCGACGCGCTTCGCGTCCTGCCCAAGTGCGGGCACGTGTTCCACCCCGGCTGCATCGACATGTGGCTGGCTTCGCACGTGACCTGCCCTGTTTGCCGCGCGAGGATGGCGGGGACGGCGCCGGCGCGTGGCGATGTGACGGTGGAAATCGGTGGCGGAAACGGTGGTGCGTTGCAGGTGTTTGATGAAAGTTCTGTGAGAGAAGGGGAAGGTGAGAACCGTGGTGGGGGGTGCGGGAATTTTGATGGGTGTGTTGAGGAGGGTAATGGGTCGTCAAAGGTGGGTGCTTTTGTGAGATCACACTCAACGGGTCACTCTTTGGTTGATGAAGCGGAGAAGAGTGTGGAAGTGGAAAACCAGGTTGTGGAGGACAGAGGTGGGAGCTTGATGAAGCGTTCGGCGAGCTACGACGTCGTTTTTGGTCGCAGAGAAGGGTGGTGGTGGGGTAGGGGTGGAGAAGTGGGTGAAGGTAGTACATATATAAGACTTGCAAGTTGCAAGTTGGGATTTTAA 888 0.5664 MMISQTKQYTHLTLFFFLVALFHATHARPDPQPPVVAPPRASNEHANNSTLIMLFVFFVFSVFITAFYSFYVRHCSERYVFELRNKGVEPEVLATCPIVSYSAAKAGNRRPVAAECAVCLGEFEGPDALRVLPKCGHVFHPGCIDMWLASHVTCPVCRARMAGTAPARGDVTVEIGGGNGGALQVFDESSVREGEGENRGGGCGNFDGCVEEGNGSSKVGAFVRSHSTGHSLVDEAEKSVEVENQVVEDRGGSLMKRSASYDVVFGRREGWWWGRGGEVGEGSTYIRLASCKLGF* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2584 295 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Lja2g2584 295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 14 256 - -
Lja2g2584 295 SMART ring_2 116 157 IPR001841 -
Lja2g2584 295 Pfam Ring finger domain 115 158 IPR001841 -
Lja2g2584 295 SUPERFAMILY RING/U-box 115 161 - -
Lja2g2584 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 163 IPR013083 -
Lja2g2584 295 CDD RING-H2_PA-TM-RING 115 158 - -
Lja2g2584 295 PANTHER RING FINGER DOMAIN-CONTAINING 14 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2584 Lja-Chr2 34970860 34972292 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2584 1 256 Rapid Response to Elicitors AT3G05200 33.333 1.21e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2584 K10664 - gmx:102665105 169.859