Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2580 ATGGCTCCGCCGCCACCACCACCACCACCGGTGGAACAACACAACGCCGACTCCTACTCCCCCGCCGCGGCCTCCTCTCTCGAGTCTCAGAGATCTATTCCGACACCGTTCCTCACCAAAACGTACCAGCTCGTCGAGGACCAATCCATCGACGACGTGATTTCCTGGAACGACGACGGATCCACCTTCATCGTTTGGAACCCCACCGTCTTCGCCAGGGACCTTCTTCCGAAATACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAATACCTACGGATTCAGGAAGGTTATACCTGATCGGTGGGAATTTTCGAACGAGTTTTTCCGCAAAGGGGAGAAACGGCTGCTCTGCGAGATTCAGCGCCGGAAGATCTCGCCGTCGGTGTCGTCTCCCACGGCGGCGGCTGCGGTAGCTCCGACGGTGGCGGTTCATTCGCCGGTTCCGCTGACTGCTGTACCGATAAGATCGCCGTCGAACTCCGGCGAGGAGCAGGTGATATCGTCGAGTTCGTCGCCGTCGCGAGGTCCGGCGGAGCTTCTCGATGAGAACGAGAGGCTGAGGAAAGAGAACGTTCAACTGAACAAGGAGCTTGCGGAGATGAGGTTGCTTTGTAACAATATATATAGTTTGATGTCTAGCTATGCGAGCGGCGGCGGTAACAACCAGCAAGCGGACGTCGGAAGTAGCGGCGGCTGCGCGCAGGGGAGCAGAGAGTCCGTGTTGACGGCGGTGAGGCCGCTTGATTTGATGCCGCCGGCGACGGAAACCGCTCCGGTGGAGATGAATCCGAAGCTGTTTGGGGTCGCGATAGGAGCGAAGCGAGCGAGAGAGAACGGTAGCGGTGGTGACGGTGGCGGTGGCGGAGGCGGAGGCGGGGAGGATGATACACTTCTGCGCATGCATCAGCCACCTCCTGCGGAGGTGAAATCAGAGCCGTCAGATTGTCAGAACCATCTCGAGAACCAGCAAACGCCGTGGCTAAATCTGTGCCGTACAACAAATCAGAGAGTTTGTAACTGA 1032 0.5785 MAPPPPPPPPVEQHNADSYSPAAASSLESQRSIPTPFLTKTYQLVEDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVIPDRWEFSNEFFRKGEKRLLCEIQRRKISPSVSSPTAAAAVAPTVAVHSPVPLTAVPIRSPSNSGEEQVISSSSSPSRGPAELLDENERLRKENVQLNKELAEMRLLCNNIYSLMSSYASGGGNNQQADVGSSGGCAQGSRESVLTAVRPLDLMPPATETAPVEMNPKLFGVAIGAKRARENGSGGDGGGGGGGGGEDDTLLRMHQPPPAEVKSEPSDCQNHLENQQTPWLNLCRTTNQRVCN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2580 343 PRINTS Heat shock factor (HSF) domain signature 37 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2580 343 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2580 343 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2580 343 MobiDBLite consensus disorder prediction 1 30 - -
Lja2g2580 343 ProSitePatterns HSF-type DNA-binding domain signature. 76 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2580 343 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 328 IPR027725 -
Lja2g2580 343 MobiDBLite consensus disorder prediction 279 321 - -
Lja2g2580 343 Pfam HSF-type DNA-binding 37 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2580 343 MobiDBLite consensus disorder prediction 156 187 - -
Lja2g2580 343 SMART hsfneu3 33 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2580 343 SUPERFAMILY "Winged helix" DNA-binding domain 34 126 IPR036390 -
Lja2g2580 343 MobiDBLite consensus disorder prediction 156 180 - -
Lja2g2580 343 Gene3D - 29 127 IPR036388 -
Lja2g2580 343 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 21 328 - -
Lja2g2580 343 Coils Coil 180 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2580 Lja-Chr2 34854944 34856510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2580 29 343 HSF AT5G62020 48.358 3.11e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja2g2580 HSF_DNA-bind 2.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2580 K09419 - gmx:100812267 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2580 2 34854944 34856510 Lja2g2580 2 34854944 34856510 ECH