LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g2578	ATGGCTCTGCTACCATCATCATCATCCTTCTTCTCCTCCTTCACCTATGCATTCACTTACGATGTATTCCTCAGCTTCAGGGGCTCTGATACTCGCTTTGGTTTTACTGGCAATCTCCACAAAACTCTCTCAGACAAGGGAATCCACACCTTCATTGATGATGAGGACCTTAAGAGAGGAGATGAAATCACACCCGCACTTATCAAGGCCATTCAAGAGTCGAGGATCGCCATACCTATCTTCTCTGTGAACTATGCTTCTTCTTCATTTTGCCTGGATGAACTTGTCACCATTATGGAGTGTGTCAAGGCAAAAGGTCGGTTGGTTTTTCCAGTTTTCTATGATGTGGATCCTTCTCATGTCAGACATCAAAGAGGAAATATTAATCGTGTAGCTTTACCTATTGCTGATTACCCAGTTGGACTAGAGTCCCAAGTGCGGCAAGTGGTTTTGCTTATGGATGTTTGGTCTGATGATAGAGTTCACATGGTAGGGATTTATGGAATAGGAGGGATTGGTAAAACAACACTTGCTCTAGCCGTTTACAACTTGATTGCTGACCATTTTGAAGGCATATGTTTTCTGGAAAATCATCTTGCCGGAAGCCCTGCTTGGTTTGGTCCTGGTAGTAGAGTCATCATTACTACTCGGGATAAACACTTGCTAGCATGTCATGGAGTTAAAAGAACATATGAAGTGGAAACGTTGAACAAGAATGATGCTTTTGAATTGCTCAGTTTTAAAGCGTTTAAGAATGACAAAGTTAGCCCGAGTTATATGGACATATTAAACCGTGTAGTGGCATATGCTTCCGGTCTTCCATTGGCTTTGGAAGTAATTGTGAGCTTTGATGCTTTGAAGGAAGAAGAGCAGAGTGTTTTCTTAGACATTGCTTGTTGCTTCAATGGACATAAGTTTGAAAAGGTCAAAAATACACTCAATGCTCATCATGACCAATGCATAACATATCAAATTGGAGTGTTGGTTGATAAATCTCTCATAAAGATAACTATATGGGGTACAGTGACACTACACGACTTGATTGAGGATATGGGTAAAGAAATTGTGCGAAGAGAATCACCAAAAGAACCTGGAAACCGCAGTAGGTTATGGTATGGAACAAGCAAAATTGAAATGATACATCTAGATTACCCGTCATTTGAAGAAGTGAATTGGAATGGAGAGGCTTTCAAGAAGATGGAAAAACTCAAAACACTTATTATTGGAAAAAGTCATTTTTCTAAAGGTCCAAAGCATCTTCCAAATAGTTTAAGAGTACTAGAGTGGTGGAAATATCCTTCACAACATTTACCAAGTGATTTTCATCCAAAGAAACTTTCCATATGCAAATTACCTGACAGTAGCTTGGTGTCCTTGGAGTTGCTAAAATCATCAAAGGCAAGTCTGATAATGATTTCATATCCTTGA	1428	0.3964	MALLPSSSSFFSSFTYAFTYDVFLSFRGSDTRFGFTGNLHKTLSDKGIHTFIDDEDLKRGDEITPALIKAIQESRIAIPIFSVNYASSSFCLDELVTIMECVKAKGRLVFPVFYDVDPSHVRHQRGNINRVALPIADYPVGLESQVRQVVLLMDVWSDDRVHMVGIYGIGGIGKTTLALAVYNLIADHFEGICFLENHLAGSPAWFGPGSRVIITTRDKHLLACHGVKRTYEVETLNKNDAFELLSFKAFKNDKVSPSYMDILNRVVAYASGLPLALEVIVSFDALKEEEQSVFLDIACCFNGHKFEKVKNTLNAHHDQCITYQIGVLVDKSLIKITIWGTVTLHDLIEDMGKEIVRRESPKEPGNRSRLWYGTSKIEMIHLDYPSFEEVNWNGEAFKKMEKLKTLIIGKSHFSKGPKHLPNSLRVLEWWKYPSQHLPSDFHPKKLSICKLPDSSLVSLELLKSSKASLIMISYP*	476

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g2578	475	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	131	297	IPR027417	-
	Lja2g2578	475	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	128	197	IPR044974	GO:0006952
	Lja2g2578	475	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	199	282	-	-
	Lja2g2578	475	SUPERFAMILY	"Winged helix" DNA-binding domain	281	379	IPR036390	-
	Lja2g2578	475	Pfam	TIR domain	20	129	IPR000157	GO:0007165
	Lja2g2578	475	Pfam	NB-ARC domain	209	318	IPR002182	GO:0043531
	Lja2g2578	475	ProSiteProfiles	TIR domain profile.	18	153	IPR000157	GO:0007165
	Lja2g2578	475	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	22	126	-	-
	Lja2g2578	475	SMART	till_3	19	156	IPR000157	GO:0007165
	Lja2g2578	475	SUPERFAMILY	Toll/Interleukin receptor TIR domain	13	128	IPR035897	-

Showing 1 to 10 of 20 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g2578	Lja-Chr2	34786269	34788483	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g2578	140	459	WRKY Transcription Factor Family	AT5G45050	27.111	9.07e-33	130

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g2578	-		-	aprc:113866727	489.574

Showing 1 to 1 of 1 entries