Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2578 ATGGCTCTGCTACCATCATCATCATCCTTCTTCTCCTCCTTCACCTATGCATTCACTTACGATGTATTCCTCAGCTTCAGGGGCTCTGATACTCGCTTTGGTTTTACTGGCAATCTCCACAAAACTCTCTCAGACAAGGGAATCCACACCTTCATTGATGATGAGGACCTTAAGAGAGGAGATGAAATCACACCCGCACTTATCAAGGCCATTCAAGAGTCGAGGATCGCCATACCTATCTTCTCTGTGAACTATGCTTCTTCTTCATTTTGCCTGGATGAACTTGTCACCATTATGGAGTGTGTCAAGGCAAAAGGTCGGTTGGTTTTTCCAGTTTTCTATGATGTGGATCCTTCTCATGTCAGACATCAAAGAGGAAATATTAATCGTGTAGCTTTACCTATTGCTGATTACCCAGTTGGACTAGAGTCCCAAGTGCGGCAAGTGGTTTTGCTTATGGATGTTTGGTCTGATGATAGAGTTCACATGGTAGGGATTTATGGAATAGGAGGGATTGGTAAAACAACACTTGCTCTAGCCGTTTACAACTTGATTGCTGACCATTTTGAAGGCATATGTTTTCTGGAAAATCATCTTGCCGGAAGCCCTGCTTGGTTTGGTCCTGGTAGTAGAGTCATCATTACTACTCGGGATAAACACTTGCTAGCATGTCATGGAGTTAAAAGAACATATGAAGTGGAAACGTTGAACAAGAATGATGCTTTTGAATTGCTCAGTTTTAAAGCGTTTAAGAATGACAAAGTTAGCCCGAGTTATATGGACATATTAAACCGTGTAGTGGCATATGCTTCCGGTCTTCCATTGGCTTTGGAAGTAATTGTGAGCTTTGATGCTTTGAAGGAAGAAGAGCAGAGTGTTTTCTTAGACATTGCTTGTTGCTTCAATGGACATAAGTTTGAAAAGGTCAAAAATACACTCAATGCTCATCATGACCAATGCATAACATATCAAATTGGAGTGTTGGTTGATAAATCTCTCATAAAGATAACTATATGGGGTACAGTGACACTACACGACTTGATTGAGGATATGGGTAAAGAAATTGTGCGAAGAGAATCACCAAAAGAACCTGGAAACCGCAGTAGGTTATGGTATGGAACAAGCAAAATTGAAATGATACATCTAGATTACCCGTCATTTGAAGAAGTGAATTGGAATGGAGAGGCTTTCAAGAAGATGGAAAAACTCAAAACACTTATTATTGGAAAAAGTCATTTTTCTAAAGGTCCAAAGCATCTTCCAAATAGTTTAAGAGTACTAGAGTGGTGGAAATATCCTTCACAACATTTACCAAGTGATTTTCATCCAAAGAAACTTTCCATATGCAAATTACCTGACAGTAGCTTGGTGTCCTTGGAGTTGCTAAAATCATCAAAGGCAAGTCTGATAATGATTTCATATCCTTGA 1428 0.3964 MALLPSSSSFFSSFTYAFTYDVFLSFRGSDTRFGFTGNLHKTLSDKGIHTFIDDEDLKRGDEITPALIKAIQESRIAIPIFSVNYASSSFCLDELVTIMECVKAKGRLVFPVFYDVDPSHVRHQRGNINRVALPIADYPVGLESQVRQVVLLMDVWSDDRVHMVGIYGIGGIGKTTLALAVYNLIADHFEGICFLENHLAGSPAWFGPGSRVIITTRDKHLLACHGVKRTYEVETLNKNDAFELLSFKAFKNDKVSPSYMDILNRVVAYASGLPLALEVIVSFDALKEEEQSVFLDIACCFNGHKFEKVKNTLNAHHDQCITYQIGVLVDKSLIKITIWGTVTLHDLIEDMGKEIVRRESPKEPGNRSRLWYGTSKIEMIHLDYPSFEEVNWNGEAFKKMEKLKTLIIGKSHFSKGPKHLPNSLRVLEWWKYPSQHLPSDFHPKKLSICKLPDSSLVSLELLKSSKASLIMISYP* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2578 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 297 IPR027417 -
Lja2g2578 475 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 128 197 IPR044974 GO:0006952
Lja2g2578 475 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 199 282 - -
Lja2g2578 475 SUPERFAMILY "Winged helix" DNA-binding domain 281 379 IPR036390 -
Lja2g2578 475 Pfam TIR domain 20 129 IPR000157 GO:0007165
Lja2g2578 475 Pfam NB-ARC domain 209 318 IPR002182 GO:0043531
Lja2g2578 475 ProSiteProfiles TIR domain profile. 18 153 IPR000157 GO:0007165
Lja2g2578 475 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 22 126 - -
Lja2g2578 475 SMART till_3 19 156 IPR000157 GO:0007165
Lja2g2578 475 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 128 IPR035897 -
Lja2g2578 475 SUPERFAMILY L domain-like 356 462 - -
Lja2g2578 475 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 128 197 - -
Lja2g2578 475 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 281 463 - -
Lja2g2578 475 Gene3D - 132 202 IPR027417 -
Lja2g2578 475 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 281 463 IPR044974 GO:0006952
Lja2g2578 475 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 199 282 IPR044974 GO:0006952
Lja2g2578 475 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 126 IPR044974 GO:0006952
Lja2g2578 475 PRINTS Disease resistance protein signature 163 178 - -
Lja2g2578 475 PRINTS Disease resistance protein signature 398 414 - -
Lja2g2578 475 Gene3D - 17 131 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2578 Lja-Chr2 34786269 34788483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2578 140 459 WRKY Transcription Factor Family AT5G45050 27.111 9.07e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2578 - - aprc:113866727 489.574