Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2573 ATGAGGGTGGATCACGTTAACTTGTTAGAATCAATTTGTCCCTATAAAAATTTTAAATCATATAATCATTCCTCTTTCAATTCCATCTTATCCCTCCTCCTCAATTTTATCTTCCTCCACAACTCAAATCCAAAAATTCAAATCACTATAATCTCAGAATCAAGAAATAAAAAACCCAAAATGGAGGGCAACAAAGAGATGGGTCTCATTGGAGAAAATTTTGATTCTGGTTTGATGGGAGGGGCGAGGGATGATGAGTATGAAAGCAGGTCTGGAAGTGACAATTTTGATGTCGCATCAGGTGATGATCAAGATGCAGGTGATGACCAGCCACCACAGAAGAAGAAAAAGAAATATCATAGACATACTCCTCAACAAATTCACGAGCTTGAAACTTTCTTCAAGGGGTGTCCTCATCCTGATGAGAAGCAAAGATCAGATCTTAGTAAGACACTAGGGTTAGAGAACAAACAAGTCAAGTTCTGGTTTCAGAATAGGAGAACCCAAATGAAGACACAACTAGAACGTCAAGAAAACATGATTCTTAAGCAAGAAAATGAAAAGCTCCGAGCAGAGAACAATATGATGCAGGAAGCTATATCAAATCCATCATGCAACACTTGTGGTGGCCCTGCCATTCTTGGTCAAATTTCATTGGAGGGGCACCAAATTAGAATTGAGAATGCTCGACTGAAAGATGAATTGAATCGGACGGGTGCCTTAGTAAGCAAGTTCTTGGGCCGGCCCCTCTCTTCATTGGGCTCTCCCATGGCTCTCTCAACCCCAAATTTCGGTCTAGAAATTGGTTTTGGAAAAAATGGGGTTGCTGATTCAAGCAATTTTAGCATGTCCTTGCCAGCGGGACTTGACATGGGAGATGGAGTTTTTGGCGCTCCACCAGCCACACTTTCTGGGACTAGATCACCAATGGGAATGATGGGAAATGAAGCCCAGGTTGAGGGATCTACGCTTACGCATCTTGCATTAGCTGCTATGGATGAATTAATTAAGATGGCTCAGATAGATAGCCCTCTTTGGATTAAGAGTTCAAGTGGGGGGCAGGAAGTGCTGAACCAAGAGGAGTATGCAAAGATTTGTTCTCCTTATACCGGTTCAAAACCCGCTGGTTATGTAACTGAAGTTTCAAGAGAAACTAGGGTAGTAATGATCAACAGTTTGGCCCTGGTGGACACATTTATGGATGCGGATCGATGGTTACAGATGTTTCCATCTATGATTACTAGAGCTGTCACCATGGATGCGATATCTAGTGACACGGCCGGAACTGGAGCTTTGCAATTGATGCATGCTGAGCTACAATTGCCTTCTCCACTAGTCCCGGTTCGCCAATTGAATTTCCTCCGGTTTTGCAAGCAGCACAGAGAAGGTGTGTGGGTTGTTGTTGATGTATCAGTTGACTTTGGTCGCAATGCCGCCAATTCGAATCCTTTCATGAACTGTAGGAGGCTTCCTTCTGGATGTGTTGTGCAGGATACACCCGAAGGCATGTCCAAGATTACTTGGGTTGATCATTCCCAATATGATGAAAATGTTATCCATCAAATGTATCGCCCTTTGGTGAATTCCGGCATTGGCTTTGGTGCTCATAGATGGGTCGCAACTCTTCAAAGACAGTGTGAATGCCTTGCAATGCTCATGTCCCCTTCAATACCATCTGAGGTCTCCCCTGTAATAAACCAAGATGGTAGGAGAAGCATGCTGAGGCTGGCGCAACGCATGACAAATTCCTTCTGGTCGGGGGTCTGTCCCTCATCTGCCAGTAAGTGGGAAATTCTTCACATTGGTAACAATAACACAAGGTTTATGTCTCGGAAACATGTGGATTACTCTGGAGAGGCTACTAGCATTGTCCTTAGTGCTGCAACTTCTGTTTGGTTGCCGGTATCGCGACAAAGGGTGTTTGATTTTCTGCGTGATGGACAAAATAGAGGCAAATGGGACATCTTTTCTAGTGGTGTAACAAATCAGGAGATGCACCATGTTATCAAAGGGCAAGGACAAGGAAATTGTGTTTCTGTACTTGGAGCTAGTAATAATGCTGCTAATGGCAATGATAGAAAATTATGGCTGCAAGATTCATGGACCGATACATCTGGTTCGATGATAGTGTATTCCTCCATCGACGTTCAGTCCTTTAACATTGTGGCAAGTGGTCAAGATTCTGCATATATTTCTCTATTTCCTTCTGGATTTTCCATTCTTCCAGATGGTCATTCAAACAACAATTGCGTTGGGACTTCAACCAATGGCAGCAACGGTGGCGCCGGCAACACCAATGCAGGTGGATGCTTGCTTACATTTGGGATACAAATGCAAAACAACCTCCCAACAACTATGCTTACAGTGGAGTCCGTTGATACTATTAATAGGCACCTCTCAAGCACCATTCAAAAGATCAAGATGCACACGGAGTTGGGCATGAATGAAGCTTTCTTTGATTCAAGTGAAATTTAG 2475 0.4335 MRVDHVNLLESICPYKNFKSYNHSSFNSILSLLLNFIFLHNSNPKIQITIISESRNKKPKMEGNKEMGLIGENFDSGLMGGARDDEYESRSGSDNFDVASGDDQDAGDDQPPQKKKKKYHRHTPQQIHELETFFKGCPHPDEKQRSDLSKTLGLENKQVKFWFQNRRTQMKTQLERQENMILKQENEKLRAENNMMQEAISNPSCNTCGGPAILGQISLEGHQIRIENARLKDELNRTGALVSKFLGRPLSSLGSPMALSTPNFGLEIGFGKNGVADSSNFSMSLPAGLDMGDGVFGAPPATLSGTRSPMGMMGNEAQVEGSTLTHLALAAMDELIKMAQIDSPLWIKSSSGGQEVLNQEEYAKICSPYTGSKPAGYVTEVSRETRVVMINSLALVDTFMDADRWLQMFPSMITRAVTMDAISSDTAGTGALQLMHAELQLPSPLVPVRQLNFLRFCKQHREGVWVVVDVSVDFGRNAANSNPFMNCRRLPSGCVVQDTPEGMSKITWVDHSQYDENVIHQMYRPLVNSGIGFGAHRWVATLQRQCECLAMLMSPSIPSEVSPVINQDGRRSMLRLAQRMTNSFWSGVCPSSASKWEILHIGNNNTRFMSRKHVDYSGEATSIVLSAATSVWLPVSRQRVFDFLRDGQNRGKWDIFSSGVTNQEMHHVIKGQGQGNCVSVLGASNNAANGNDRKLWLQDSWTDTSGSMIVYSSIDVQSFNIVASGQDSAYISLFPSGFSILPDGHSNNNCVGTSTNGSNGGAGNTNAGGCLLTFGIQMQNNLPTTMLTVESVDTINRHLSSTIQKIKMHTELGMNEAFFDSSEI* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2573 824 SUPERFAMILY Bet v1-like 322 548 - -
Lja2g2573 824 Pfam Homeodomain 116 171 IPR001356 GO:0003677
Lja2g2573 824 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 808 IPR042160 -
Lja2g2573 824 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Lja2g2573 824 Coils Coil 167 202 - -
Lja2g2573 824 ProSiteProfiles START domain profile. 317 551 IPR002913 GO:0008289
Lja2g2573 824 Pfam START domain 327 548 IPR002913 GO:0008289
Lja2g2573 824 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
Lja2g2573 824 SMART HOX_1 115 177 IPR001356 GO:0003677
Lja2g2573 824 Gene3D - 102 190 - -
Lja2g2573 824 Gene3D - 326 546 IPR023393 -
Lja2g2573 824 SMART START_1 326 548 IPR002913 GO:0008289
Lja2g2573 824 MobiDBLite consensus disorder prediction 57 124 - -
Lja2g2573 824 SUPERFAMILY Homeodomain-like 103 173 IPR009057 -
Lja2g2573 824 SUPERFAMILY Bet v1-like 576 805 - -
Lja2g2573 824 CDD START_ArGLABRA2_like 322 547 - -
Lja2g2573 824 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 56 808 - -
Lja2g2573 824 CDD homeodomain 120 173 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2573 Lja-Chr2 34701383 34707468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2573 61 807 Homeobox Transcription Factor Family AT3G61150 50.921 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja2g2573 START 2.5e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2573 K09338 - gmx:100785102 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0810 2 7431629 7437183 Lja2g2573 2 34701383 34707468 ECH
Lja2g2573 2 34701383 34707468 Lja2g2573 2 34701383 34707468 ECH