Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2570 ATGGGCTTTTTCCGGCGACTCTTCGGCGGCAAGAAACACCCTCCTCCGCCGGCACTTTCCGACGGGTCGGGTTCCAAATCCGGACCAAAAGACAGAAGGAGAAGCTGGAGCTTCGCCAAAAACAGCACCAGAGGCACATCCTCCAATAAGTCACTCTCACCACTCAACCACCAATTTGACTCTTCCACCTCCTCCTCTCCCTTCACAGACTCCTTGGATGCAAATAAGCATGCCATCGCCGTCGCCGCCGCCACTGCTGCCGTTGCTGAGGCCGCACTCGCCGCCGCCCATGCTGCCGCTGAAGTTGTTCGGTTAACCAGTGGCAGCGGACCTGTCCCGGCTGCTCAAGACCGGCGGCGGCAGGCGGAGGAAACAGCTGCTGCCGCTGTCAAGATACAGTCAGCGTTCCGAGGTTACTTGGCAAGGAGAGCATTGAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCTTTGGTGAGGGGCCACATTGTAAGAAAGCAAACTGCAGATATGCTCAGGCGCATGCAAACATTGGTGCGGCTGCAATCGCGGGCACGTGCTAATCGGGTGCACATGTCAGATAATATGCACTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCCCTGGTGATCATGAGCTCTCACTTCGCGCCTTTAGTACCAAATTTGATGGATCTTCTATCCTCCAGAGATGTAGTTCCAATGCAAATTTCAGGGACATTAACTTAGAGAAAACCCGGTTCGGTTCCGGTTGGTTAGACAGTTGGATGGAAGAAAATGCATGGAGCCAAACAGGAGACGCTTCATTGAAAAAGGGTCACCCTGATGATGAGAAGAGTGACAAGATTCTTGAAGTAGATACTTGGAAGCCACACTTAAACTCACATCATTATTTGCCTCCTGATTACAGTAATGAGAATTTTACAGCACACGAGTCTCCATCGAAACGATCTTCTTCTAAAGCTCCGAATCCAAGTCATTCTTATAGGGAGATCTCATCCTTTAATTCTCTGAAACTTCAAAAAGGAAAAGAAGCAGCTTCATCACGAACCGCGGAGAACAGCCCACAAGCATTTTCTGCCTCCTCTAGGCTTGGAAGTAGTGCGAGGCGAGGTCCTTTTACGCCTACTAAAAGTGAGTGCTCATTTAGTTTCTTCAGCGGCTACCCAGGTCATCCGAATTACATGGCGAATACTGAATCTTCTAAAGCTAAGGTCAGGTCACAGAGTGCTCCGAGGCAAAGGCTAGAGTTTGAGAGATATGGCGGCGCCACAACTAGAAGGTCATTGGTTCAGGGTCTTTGGGAAGCAGGGCCTAATTCAGATAGGGATTCGGATTTCAGAATAAAGGGCTATTCAGTTTCAACAACAAGCAGCTTCAACAGAATTGGGAGTACTAATTTAAGGTGA 1407 0.4932 MGFFRRLFGGKKHPPPPALSDGSGSKSGPKDRRRSWSFAKNSTRGTSSNKSLSPLNHQFDSSTSSSPFTDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGSGPVPAAQDRRRQAEETAAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQSRARANRVHMSDNMHSFKSSLSHYPVPGDHELSLRAFSTKFDGSSILQRCSSNANFRDINLEKTRFGSGWLDSWMEENAWSQTGDASLKKGHPDDEKSDKILEVDTWKPHLNSHHYLPPDYSNENFTAHESPSKRSSSKAPNPSHSYREISSFNSLKLQKGKEAASSRTAENSPQAFSASSRLGSSARRGPFTPTKSECSFSFFSGYPGHPNYMANTESSKAKVRSQSAPRQRLEFERYGGATTRRSLVQGLWEAGPNSDRDSDFRIKGYSVSTTSSFNRIGSTNLR* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2570 468 Pfam Protein of unknown function (DUF4005) 354 430 IPR025064 -
Lja2g2570 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 170 IPR027417 -
Lja2g2570 468 MobiDBLite consensus disorder prediction 299 375 - -
Lja2g2570 468 MobiDBLite consensus disorder prediction 39 68 - -
Lja2g2570 468 MobiDBLite consensus disorder prediction 1 68 - -
Lja2g2570 468 PANTHER IQ-DOMAIN 5-RELATED 1 466 - -
Lja2g2570 468 ProSiteProfiles IQ motif profile. 149 176 IPR000048 GO:0005515
Lja2g2570 468 Pfam IQ calmodulin-binding motif 127 146 IPR000048 GO:0005515
Lja2g2570 468 Pfam IQ calmodulin-binding motif 149 166 IPR000048 GO:0005515
Lja2g2570 468 Gene3D - 122 178 - -
Lja2g2570 468 PANTHER CALMODULIN-BINDING PROTEIN 1 466 - -
Lja2g2570 468 ProSiteProfiles IQ motif profile. 125 153 IPR000048 GO:0005515
Lja2g2570 468 SMART iq_5 147 168 IPR000048 GO:0005515
Lja2g2570 468 SMART iq_5 124 146 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2570 Lja-Chr2 34626653 34632420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2570 1 417 IQD Protein Family AT5G62070 48.387 5.90e-63 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2570 - - gmx:100785181 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2570 2 34626653 34632420 Lja2g2570 2 34626653 34632420 ECH