Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2553 ATGCTCCCCATGGCACCTTCTCGGGTGGCTGGGGGGTTAACCCAATCATCGTCAAGATCTGGAATTTTCTTTCAAGGAGACGGGCAGTCACAGAATGTAGTTAACTCTCACTTAAGCTCGCCTTTTGTTAACTCATCTAACATAGTTCCTGGAAATGGGCGTTCGAACCTGGGTCTGGTTTCTAGGGATATGAATAATGCAGTTTTGAACAGTGTGGCAAACTCGGCACCAAGTGTTGGAGCCAATTCTATGGTCACAGATGGAAATTCCGCACTCTCTGGTGGCCCCCACATGCAGAGAAGTGCAAGCTTTAACACAGACTCATACATGAGATTACCTGCCTCACCCATGTCATTTACGTCAAATAATATTAGTATTTCTGGGTCACCAGTGATGGATGGTTCCTCTGTAGTACAGCAGAATAATTCTCATCAAGATCAGATTGCTCAACAATTGCAGCAGAATCAGCAGCTGCAGCAGAGTGCTCCTGGTGCTACTTCTCTGCCTGCTTCTCAAACTGGCCCTTCTGCGCCACAAATGGGAGCACAAGTAGTAGGATCTATGGTTCAAGATCCAAATACTGTATCCCACCCACTAAAGAAACCTAGGCTTGACATCATCCAGGGTGATTTAATGCACAATCAGGCATTACAGCAGCTTCTTCAAAGACAAGAGACCATACAATTCCAAGGTCGTAATCCTCAGTTCCAGCAGGCTCTTTTTCTGCAGCAGCAGCAAAGGGTGAGGCAACAACAAATTCTACAGCACCACTTGCAGCAGGCACACTTGCAGCAACAACAACAACAACCAATGCAATTAAGGCAGCAGTTACAACAACAAATGATGCAGCCTGTGTCTTCCGTGAAGCGTCCATACGACAGTGGTGTTAATGGTGTATGTGCCCGTCGATTGATGCAGTACCTTTATCATCAAAGGGAACGACGAAATGACAACAGTATTGCCTATTGGAGAAAATTTGTGGTTGAATATTACTCTCCTCGTGCAAAGCAACGGTGGTGCTTATCATTATATAATAACGTTGCGAACCACGCATTGGGTGTTTTCCCCCAAGTGTCTATGGATGCATGGCAGTGCGACATATGTGGTTCTAAATCTGGAAAGGGATTTGAGGCAACTTTTGATGTACTACCTAGACTTAATGAAATCAAATTTGGCAGTGGAGTGATTGATGAACTTCTGTTTTTGGACTTGCCACATGAGTCAAAACTTCCTTCCGGTGCAATGGTGTTAGAATATCAAAAGGCAGTTCAAGAGTGTGTGTATGAGCAGCTTCGTGTTGTTCGTGAGGGTAAACTTCGTATCATATTCACTCAAGACCTGAAGATATTTTCTTGGGAGTTCTGTGCAAGGCGTCATGAAGAACTTCTTCCTCGAAAGTTTGTTGCACCACGGGTCAACCAATTAGTTCAAGTGGCTCAAAAATGCCAAAGTACAATTGCTCAAAGTGGGTCAGATGGGGTTTCTCAGGAAGACTTGAAAACAAACAGCAACATGGTACTGACAGCTGGGCGTCAGCTTGCAAAGAGTTTGGAGCTACCATCTTTAAATGACTTAGGCTTTTCAAAAAGATATGTGAGATGTTTGCAGATTGCTGAGGTTTGCAGTAGCATGAAAGATCTAATAGATATCTGTTATGAGCACAAAATTGGACCAATTGAGAGCTTGAAAAATTTTCCTCGACTTGCAACCTCAGCAAAGCTCCAGACGCTGAAGACACCAGAGTTGGAACAACTAGCAAACGTTCAAGGTCTGCCAACTGATCGTAACACACTTAATAAGTTGATGGCATCAAATCCTGGATTGAGTGACCATATAAACAATAATCATAACACGGTTAATCGTTGTGGTTTGGGTGGGTCAGCAGTACAGGCTGCTATGGCACTGAACTACCAGAATCATATAATGAGGCAAAACTCGATGAACTCAAGCCCTGGCTCACTTCAGCAAGAAGGACCCTCTTTCAATAACTCAAACCAGAGTCCCTCCTCAGCTTTGCAAGGTGCTGGTTCAATGCAGAATTCACCTATTAGTGGTTTACCAAGTCCACAGATACACCACCAACCGCATCAGCATCAGCAGCAGCAACACCTTTCACAACGCTCATTAAATGCAAATAGTTCACATCAACAAAACCAGTCACCGAGATCCCAAGGAAATCATGCTGAGCAGGTGCACCAACTAATGCAGATGTCAAATAACAATGGGGGTGCGCAACCACCGTCTCGTGGTGGACCCATTGCAAATGGGAACATGGTCAAGAACGGGCCGGGTTTTGTGGGCCAAACTCCACCCATACCTGGAGGAGGTTCTGGCAATGTTCATGGGAATAATGGAGCTGTTTCTAGGAGTCATAGCTTCAAAGCAGCTTCAAGCAGTGATTCTTATGCCGCTGGAGGCAACAATGGGTTCAACCAGAGAACATCTGATATTATACAACATCGCCATCAACAGCAAGAGCAAGATGTGGTACAGAACATTACCCATGAGTTCACGGATGACTTCTTTAACAGTGATCTAGATGATAACATGGCTTTTGTCTGA 2562 0.4457 MLPMAPSRVAGGLTQSSSRSGIFFQGDGQSQNVVNSHLSSPFVNSSNIVPGNGRSNLGLVSRDMNNAVLNSVANSAPSVGANSMVTDGNSALSGGPHMQRSASFNTDSYMRLPASPMSFTSNNISISGSPVMDGSSVVQQNNSHQDQIAQQLQQNQQLQQSAPGATSLPASQTGPSAPQMGAQVVGSMVQDPNTVSHPLKKPRLDIIQGDLMHNQALQQLLQRQETIQFQGRNPQFQQALFLQQQQRVRQQQILQHHLQQAHLQQQQQQPMQLRQQLQQQMMQPVSSVKRPYDSGVNGVCARRLMQYLYHQRERRNDNSIAYWRKFVVEYYSPRAKQRWCLSLYNNVANHALGVFPQVSMDAWQCDICGSKSGKGFEATFDVLPRLNEIKFGSGVIDELLFLDLPHESKLPSGAMVLEYQKAVQECVYEQLRVVREGKLRIIFTQDLKIFSWEFCARRHEELLPRKFVAPRVNQLVQVAQKCQSTIAQSGSDGVSQEDLKTNSNMVLTAGRQLAKSLELPSLNDLGFSKRYVRCLQIAEVCSSMKDLIDICYEHKIGPIESLKNFPRLATSAKLQTLKTPELEQLANVQGLPTDRNTLNKLMASNPGLSDHINNNHNTVNRCGLGGSAVQAAMALNYQNHIMRQNSMNSSPGSLQQEGPSFNNSNQSPSSALQGAGSMQNSPISGLPSPQIHHQPHQHQQQQHLSQRSLNANSSHQQNQSPRSQGNHAEQVHQLMQMSNNNGGAQPPSRGGPIANGNMVKNGPGFVGQTPPIPGGGSGNVHGNNGAVSRSHSFKAASSSDSYAAGGNNGFNQRTSDIIQHRHQQQEQDVVQNITHEFTDDFFNSDLDDNMAFV* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2553 853 MobiDBLite consensus disorder prediction 10 25 - -
Lja2g2553 853 MobiDBLite consensus disorder prediction 644 813 - -
Lja2g2553 853 MobiDBLite consensus disorder prediction 1 25 - -
Lja2g2553 853 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 8 158 - -
Lja2g2553 853 MobiDBLite consensus disorder prediction 781 813 - -
Lja2g2553 853 MobiDBLite consensus disorder prediction 644 746 - -
Lja2g2553 853 MobiDBLite consensus disorder prediction 130 180 - -
Lja2g2553 853 PANTHER LIM DOMAIN-BINDING PROTEIN 174 847 IPR029005 -
Lja2g2553 853 MobiDBLite consensus disorder prediction 130 181 - -
Lja2g2553 853 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 174 847 - -
Lja2g2553 853 Pfam LIM-domain binding protein 303 563 IPR029005 -
Lja2g2553 853 PANTHER LIM DOMAIN-BINDING PROTEIN 8 158 IPR029005 -
Lja2g2553 853 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2553 Lja-Chr2 33959047 33964663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2553 298 567 C2H2 Transcription Factor Family AT1G43850 57.407 7.59e-103 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2553 - - gmx:100816886 1091.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2553 2 33959047 33964663 Lja2g2553 2 33959047 33964663 ECH