Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2538 ATGGCGTTTACAACAGTGTTATGGCAGTGCCACCCTCCACCTTCACCTTCTTCTTCTCCTTCTTCTTTCAGAACTCTGAAACCAACACTCTCATTCTCACTTCCACGCCGTCACCACCAATTGTGCCTCTCCTCTCGTTCCTCAGCCACAACCCCGCCGCGTGCCTACGTCACCGGACCCGCATCCGACCCGATTGTCAGCGATCCGGACCCGAAGCTTGACGAGCTTCCACCGGAGAAGCCGAAGCCACCCAACGTCATTACATGGGAACTCCTCTCCACTCTGCTGATGAAGCACAAACTCCGCCTCGCTGTCACTGCTGCATCTCTCTTTGCCTGCTCCGCCTGTACCCTATCCATGCCCATTTTTTCTGGGCGTTTTTTCGAAATTCTCATTGGTGCCAGACCTGAGCCTTTATGGAGGCTGCTCAGTAAAATAGGAATCCTATATGCCCTGGAGCCACTTTTGACTGTAATTTTCGTTACAAATATGAACATAGTATGGGAGAAAGTTATGTCAACGTTGAGAGCTCAGATCTTTGGAAGAATATTGATTCAGAAGGTTGAGTTTTTTGACAAATACAAGGTGGGTGAGCTCACAGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAGCTATTGTCAGTGAGAATGTTTCAAGGGATCGTGGATTCAGGGCATTATCTGAGGTCACTGGAACGATGTTCATACTTTTTTATTTATCTCCTCAATTGGCACCAATTCTGGGTGTTCTGATGCTTGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCAACTTTGCCTATATTTAAAGCACATGGGTTGGCCCAAGCTTCTATTTCTGATTGTGTAGCAGAAACATTTTCTGCTATTCGAACAGTAAGGTCCTTTAGTGGAGAAAAGCGGCAAATGTTTACATTTGCAAACCAGGTCCTATCTTTTCAATCAAGCGGAATAAAGCTTGGAACTTTCAAGTCTGTAAATGAATCCTTAACTAGAGTTGCTGTTTATATTTCTTTAATTGCATTATATTGTCTTGGAGGAAGCAAAGTTAAGGCGGGTGAACTATCTATTGGAACTATGGCATCTTTTATTGGATATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTCCGTGGAACTTTTGCTGCTGTTGAGAGGATCAATTCTGTTTTGTCTGGAGTTCAAGTTGATGATGCCCTTGCCTACGGCTTGGAAAGAGAACTGAAACAAAAAGCACTGGACGATGAAAACTATAAGTTGTTCTTCTCTGATAGTCCTGATGAGAAAAACCAAAGAAGTTATTTGCATTACATGTCAGCGCTGAAAACATCTAGCAATGTGTATAGCTTAGCTTGGTCTGGAGATGTTTGTCTTGAAGATGTGTATTTCTCTTATCCTTTAAGGCCAGATGTGGAAATCTTACGTGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTCGTGGGTCCTAGTGGTGCAGGCAAGAGTACAATTGTACAACTGTTGTCTCGATTTTATGAGCCAGCAAAAGGTTGTATAACAGTTGCAGGAGAGGATGTTCGAACATTTGACAAGAGTGAATGGGCCCGGGCAGTCTCTATCGTAAATCAAGAGCCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGGCTTCCAGATGATGATGTTTCTAAAGATGATGTGATTAAGGCAGCAAAAGCTGCAAATGCTCATGATTTTATAATTTCACTTCCACAGGGCTATGACACACTTGTTGGTGAGCGTGGAGGCCTACTGAGTGGAGGCCAGAGGCAGAGAATTGCTATTGCCCGAGCTCTCCTAAAGAATGCTCCTATTCTCATACTCGATGAGGCCACGAGTGCCTTGGATACTGTAAGTGAGCGCTTGGTACAGGATGCTCTCAACCATTTGATGAAGGGGAGGACAACATTAGTGATAGCTCATCGATTAAGCACAGTTCAAAATGCCTATCAAATTGCACTTTGTTCTGATGGGAGGATTGCAGAACAAGGCACCCACTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGGCACTCAAAGGCTTGCATTTGAGTAA 2127 0.4344 MAFTTVLWQCHPPPSPSSSPSSFRTLKPTLSFSLPRRHHQLCLSSRSSATTPPRAYVTGPASDPIVSDPDPKLDELPPEKPKPPNVITWELLSTLLMKHKLRLAVTAASLFACSACTLSMPIFSGRFFEILIGARPEPLWRLLSKIGILYALEPLLTVIFVTNMNIVWEKVMSTLRAQIFGRILIQKVEFFDKYKVGELTGLLTSDLGSLKAIVSENVSRDRGFRALSEVTGTMFILFYLSPQLAPILGVLMLAVSISIAVYKRSTLPIFKAHGLAQASISDCVAETFSAIRTVRSFSGEKRQMFTFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSIGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVLSGVQVDDALAYGLERELKQKALDDENYKLFFSDSPDEKNQRSYLHYMSALKTSSNVYSLAWSGDVCLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTIVQLLSRFYEPAKGCITVAGEDVRTFDKSEWARAVSIVNQEPVLFSVSVGENIAYGLPDDDVSKDDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAEQGTHFELLAKKGQYASLVGTQRLAFE* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2538 708 Pfam ABC transporter 482 633 IPR003439 GO:0005524
Lja2g2538 708 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 104 387 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2538 708 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 45 706 - -
Lja2g2538 708 MobiDBLite consensus disorder prediction 45 81 - -
Lja2g2538 708 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 464 702 IPR003439 GO:0005524
Lja2g2538 708 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 45 706 IPR039421 -
Lja2g2538 708 CDD ABC_6TM_TAP_ABCB8_10_like 109 395 - -
Lja2g2538 708 ProSitePatterns ABC transporters family signature. 605 619 IPR017871 GO:0005524
Lja2g2538 708 Pfam ABC transporter transmembrane region 109 374 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g2538 708 SMART AAA_5 491 685 IPR003593 -
Lja2g2538 708 SUPERFAMILY ABC transporter transmembrane region 92 395 IPR036640 GO:0005524|GO:0016021
Lja2g2538 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 703 IPR027417 -
Lja2g2538 708 Gene3D - 462 705 IPR027417 -
Lja2g2538 708 Gene3D ABC transporter type 1, transmembrane domain 75 401 IPR036640 GO:0005524|GO:0016021
Lja2g2538 708 CDD ABC_MTABC3_MDL1_MDL2 466 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2538 Lja-Chr2 33369196 33375809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2538 461 708 Calmodulin-binding Proteins AT2G36910 54.183 6.00e-73 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2538 K05657 - gmx:100791034 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2538 2 33369196 33375809 Lja2g2538 2 33369196 33375809 ECH