Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2526 ATGGCTATGACCATGACCCACGGTATATCTCTATTAGAAAAGAGAACCCTAATCCGAGTCTTCTATCCGGCAAACCCTCTCCTCCGACGCCGCCTCCTCCTCCTCCATCACCAGATCTTCAATTTGATTACTTCAGTCAAAGAATTCTGTCCATTCTCAATCATGGCAACTAGACTTCAGTTTGAGAACAATTGTGAAATTGGAGTGTTCTCTAAACTCACCAATGCCTATTGCTTGGTTGCTATTGGAGGTTCTGAAAACTTCTACAGTGTATTCGAAACTGAGTTGGCAGATGTTATCCCTGTGGTCAAGACATCTATTGGGGGCACTCGTATCATTGGTCGTCTTTGTGCCGGAAACAAGAATGGGCTTCTCTTGCCCCATACCATCACTGACCAAGAACTTCAACATTTGAGAAACAGTCTGCCTGATCAAGTTGTTGTTCAGCGGATAGACGAAAGATTATCTGCTCTGGGAAATTGTATTGCATGTAATGACCATGTGGCCCTCACTCACACTGATCTTGACAGGGAAACTGAGGAGTTGATTGCCGATGTTCTTGGGGTGGAAGTTTTCAGGCAGACAATTGCTGGCAATATTCTTGTTGGTAGCTACTGTACCATCTCCAATAGAGGTGGCTTGGTCCACCCTCATACTTCTGTGGAAGACTTGGATGAACTTTCTACTCTACTCCAGGTTCCTTTGGTGGCCGGGACTGTGAACCGGGGCAGTGAAGTTATAGCTGCTGGAATGACAGTTAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTTTCTGTAATTGAGAGCGTTTTCAAGCTGAGGGAAGCACAGCCTAGTGCCATTGTGGACGAGATGAGGAAATCCCTTATTGATAGCTATGTTTGA 900 0.4533 MAMTMTHGISLLEKRTLIRVFYPANPLLRRRLLLLHHQIFNLITSVKEFCPFSIMATRLQFENNCEIGVFSKLTNAYCLVAIGGSENFYSVFETELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTITDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEELIADVLGVEVFRQTIAGNILVGSYCTISNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2526 299 SUPERFAMILY Pentein 55 278 - -
Lja2g2526 299 Gene3D - 55 279 - -
Lja2g2526 299 CDD IF6 56 277 IPR002769 GO:0042256|GO:0043022
Lja2g2526 299 SMART eIF6neu2 57 258 IPR002769 GO:0042256|GO:0043022
Lja2g2526 299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 55 299 IPR002769 GO:0042256|GO:0043022
Lja2g2526 299 Pfam eIF-6 family 58 257 IPR002769 GO:0042256|GO:0043022
Lja2g2526 299 Hamap Translation initiation factor 6 [eif6]. 44 299 IPR002769 GO:0042256|GO:0043022
Lja2g2526 299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 55 299 - -
Lja2g2526 299 TIGRFAM eIF-6: putative translation initiation factor eIF-6 58 278 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2526 Lja-Chr2 32881629 32887884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2526 55 299 Eukaryotic Initiation Factors Gene Family AT3G55620 91.837 3.08e-173 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2526 K03264 - ming:122066887 471.085